PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00015.81
Common NameAMTR_s00015p00228580
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family WRKY
Protein Properties Length: 389aa    MW: 43197.9 Da    PI: 7.8267
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00015.81genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY86.42.6e-27119178258
                                              --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
                                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                                               D y+WrKYGqK++ g+++pr+YYrCt++   gCp++k+v+rs++d ++++itY+g+H++
  evm_27.model.AmTr_v1.0_scaffold00015.81 119 GDRYTWRKYGQKDILGAKYPRGYYRCTHRnsqGCPATKQVQRSDDDHSIFDITYRGKHTC 178
                                              59**************************98889*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182902.62E-23117178IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.3E-26117178IPR003657WRKY domain
PROSITE profilePS5081122.412118176IPR003657WRKY domain
SMARTSM007741.1E-36118180IPR003657WRKY domain
PfamPF031068.8E-26120178IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MEVIGEWERK LLVQELSAGQ EAAKELLSNA ENSVAKEAKV QKILASISNA LSLLRQTDAN  60
DDSPDSGCRS PLSDDSGKSC ARPSKDQDRR EISKKRKMLP QWTERIGISS DSWCEGSLGD  120
RYTWRKYGQK DILGAKYPRG YYRCTHRNSQ GCPATKQVQR SDDDHSIFDI TYRGKHTCIY  180
STHRNPTNSP KSQPENVLDF KAGGLNIKTE APENAEMIGS CPSFSFPCTP TVDSKGIFSP  240
ATSAPENQFS GGGFSPAFVS PTTSESNYFA GLVRETQNHE IHEHACSCYN RDFHSILPCH  300
SSRALLRSTV EKRFREENAV SSISGDLSSE SYQSQSKELL HFLCWKNHAT AAATPVASIT  360
ANFPTTSPLQ FPSSERQFPS LQRCERRY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-201191761774Disease resistance protein RRS1
5w3x_D2e-201191761774Disease resistance protein RRS1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011624454.10.0probable WRKY transcription factor 53
TrEMBLW1PNZ90.0W1PNZ9_AMBTC; Uncharacterized protein
STRINGERN089050.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.12e-41WRKY family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]