PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00013.75
Common NameAMTR_s00013p00150040, LOC18438061
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family SBP
Protein Properties Length: 405aa    MW: 44464.1 Da    PI: 7.573
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00013.75genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP138.22.3e-43105182178
                                              --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT--- CS
                                      SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhn 70 
                                              +Cqv+gC++dls++k+yhrrhkvCevh+k+p+v v+g+eqrfCqqCsrfh+l+efDe+krsCr+rL++hn
  evm_27.model.AmTr_v1.0_scaffold00013.75 105 VCQVDGCNVDLSSVKDYHRRHKVCEVHAKTPMVRVNGIEQRFCQQCSRFHRLEEFDEGKRSCRKRLDGHN 174
                                              6********************************************************************* PP

                                              ----S--- CS
                                      SBP  71 errrkkqa 78 
                                              +rrrk+q+
  evm_27.model.AmTr_v1.0_scaffold00013.75 175 RRRRKPQP 182
                                              *****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.5E-34100167IPR004333Transcription factor, SBP-box
PROSITE profilePS5114133.248103180IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.71E-41104185IPR004333Transcription factor, SBP-box
PfamPF031101.8E-33106179IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MDWDIKTSSW DFENFVVDSA KGENHASGVQ ETEREGVREK AIEHGAVDCK ERQGVPFFDL  60
KLGRLGDLED GLESKDFRET SSSSSVASPA SSSKRARATN QTTVVCQVDG CNVDLSSVKD  120
YHRRHKVCEV HAKTPMVRVN GIEQRFCQQC SRFHRLEEFD EGKRSCRKRL DGHNRRRRKP  180
QPESYYGSPS SLLSRFQGGR LGPYVGPQLF QNTMHGPNWP EAPKTEQDNT YNAHHHPLHA  240
PHLERQPPAY ANPVSRGFKT SKQFPFLQSS TEILVSSGNS TLFSQGLTRV SDCALSLLST  300
PTQSSSISLT HIMHGDRIPM AQPMVHAHGH GIQFGNPMSS NSGSSNVFSS SGLGDDHVGG  360
AVIVSDANDA ELQGHAMMQH HHGHHGVGSS KDGSSSSQGL PFSW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A9e-311051791084squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1162179KRSCRKRLDGHNRRRRKP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00555DAPTransfer from AT5G50570Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006848316.10.0teosinte glume architecture 1
TrEMBLW1PIU10.0W1PIU1_AMBTC; Uncharacterized protein
STRINGERN098970.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9717230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.19e-46SBP family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]