PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm_27.model.AmTr_v1.0_scaffold00012.109

Common Name

AMTR_s00012p00176640, LOC18436056

Organism

Amborella trichopoda

Taxonomic ID

13333

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

Dof

Protein Properties

Length: 303aa MW: 32255.8 Da PI: 8.5792

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00012.109	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.3	3.9e-39	57	115	4	62
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +al+cprCdstntkfCyynnyslsqPr+fCk+CrryWt+GGalrnvPvGgg+rknk+++ evm_27.model.AmTr_v1.0_scaffold00012.109 57 TALRCPRCDSTNTKFCYYNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRKNKRTK 115 6789****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-24	58	108	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.0E-33	58	113	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.776	59	113	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	61	97	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MVFTTVPLYI DPPNWPQQEQ EGGQEGTAIG IGTVSVPASA ATAGRARGAR PPASEATALR 60 CPRCDSTNTK FCYYNNYSLS QPRHFCKTCR RYWTRGGALR NVPVGGGCRK NKRTKNNSSN 120 SGSSASSSRP SPQLDHHSAV TTEQLGFPMA IPEFMNANRQ ASGRDFSTTP VELLDMVDFR 180 VQAGQLGQHN FLGFGQGEGL VGLQQQGFYG LEGGEQGYVG ASGLRIRNPL EDVENGFMGA 240 SGFRGRNTGN IPQAAVKLED GRSLGLVAAG LGVQRPDSGS GEQYWNPWTD LSGFTSSTGP 300 LL*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006846146.1	0.0	dof zinc finger protein DOF5.1
TrEMBL	W1PJI4	0.0	W1PJI4_AMBTC; Uncharacterized protein
STRING	ERN07821	0.0	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37590.1	8e-31	DNA binding with one finger 2.4

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00012.109
Entrez Gene	18436056

Publications ? help Back to Top
Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323]