PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00011.221
Common NameAMTR_s00011p00265640
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family BES1
Protein Properties Length: 701aa    MW: 79881.4 Da    PI: 6.7574
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00011.221genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822143.22.4e-44721982133
                                    DUF822   2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyr 70 
                                               ++grk+++kE+E++k+RER+RRai+++++aGLR++Gn+ lp+raD+n+Vl+AL+reAGw+ve+DGttyr
  evm_27.model.AmTr_v1.0_scaffold00011.221  72 TKGRKEREKEKERTKLRERHRRAITSRMLAGLRQYGNFTLPARADMNDVLAALAREAGWTVEPDGTTYR 140
                                               789****************************************************************** PP

                                    DUF822  71 kgskpleeaeaagssasaspesslq.sslkssalaspvesysaspksssfpspssldsislasa 133
                                                +  p     +   +  + +es+l+ +s+k+++++s ++   + ++ ++++sp+s ds  ++++
  evm_27.model.AmTr_v1.0_scaffold00011.221 141 TS--PA----TLTPFPIRAVESPLSaTSMKNCSMKSSLDFPTSALRIEDSLSPTSPDSGLVTEK 198
                                               44..44....344455555555555556889999999999999999999999998887666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056871.6E-4473212IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514455.42E-162234668IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.801.3E-180236668IPR013781Glycoside hydrolase, catalytic domain
PfamPF013733.3E-87243650IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.2E-56274288IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.2E-56295313IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.2E-56317338IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.2E-56410432IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.2E-56483502IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.2E-56517533IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.2E-56534545IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.2E-56552575IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.2E-56590612IPR001554Glycoside hydrolase, family 14
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 701 aa     Download sequence    Send to blast
MDYNRGVEMS VKQDLDHNND HHLQAQIPPQ LQVQIPSQAQ VQNQLIQTPQ NETPRRLRGF  60
AATAAGVTSL STKGRKEREK EKERTKLRER HRRAITSRML AGLRQYGNFT LPARADMNDV  120
LAALAREAGW TVEPDGTTYR TSPATLTPFP IRAVESPLSA TSMKNCSMKS SLDFPTSALR  180
IEDSLSPTSP DSGLVTEKDQ KNDKYRNPSP IDSSDSLDAD QHMRDVRPGD PDDFSETPYI  240
PVYVMLPLGI INNFCQLVDP EAVCRDLRRL KSINVDGVIV ECWWGIVEGW SPQKYIWSGY  300
RELFNIVREV KLKLQIVMAF HECRANGGSE MSIPLPKWIL EIGKDHQDIY FTDRERRRNV  360
ECLSWGIDKQ RVLKGRTAIE VYFDFMRSFR MEFDDLFVES LISAVEIGLG PSGELQYPSF  420
PERMGWRYPG IGEFQCYDKY LQHSLRKAAK LRGHSFWARG PDNAGQYNSQ PHETGFFCDR  480
GDYDSYYGRF FLQWYSQVLI DHADHVLALA NLAFEGTPIV AKIPAVYWWY RTASHAAELT  540
AGFYNPSNQE GYTLILNILK KHSATFRFIF SGLQLTPQDN DETMADPEGL TWQVLNAAWD  600
QKMNIASQNA VPCYDREGFN RILETAKPRN DPDRHHLSSF AYQRMSPSLI QRASFFSEFD  660
RFVKSMHGLV PFWVACLEFT SSTIGVLALM VGDLGEGPKK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1v3i_A1e-13123966811443Beta-amylase
1wdq_A1e-13123966811443Beta-amylase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00543DAPTransfer from AT5G45300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011624011.10.0beta-amylase 8 isoform X1
SwissprotQ9FH800.0BAM8_ARATH; Beta-amylase 8
TrEMBLW1NG790.0W1NG79_AMBTC; Beta-amylase
STRINGERM947970.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP97651112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45300.10.0beta-amylase 2
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]
  2. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]