PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00011.199
Common NameAMTR_s00011p00262800, LOC18422704
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family HB-other
Protein Properties Length: 379aa    MW: 41700.3 Da    PI: 7.7121
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00011.199genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.61.8e-071375656
                                              S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHHH CS
                                  Homeobox  6 tftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRakek 56
                                              +ft+ ++ e+e++ ++  n  p +e +  LA+k            ++ +qV +WFqNrR+ ++
  evm_27.model.AmTr_v1.0_scaffold00011.199 13 RFTAPEVLEMEACLREvnNGIPAREVICALAEKFsaspdrtgkvTVNPKQVWNWFQNRRYAQR 75
                                              588888899999999655888999999999999999999999999**************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003890.003781IPR001356Homeobox domain
SuperFamilySSF466892.48E-101276IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-51377IPR009057Homeodomain-like
PROSITE profilePS500719.4751377IPR001356Homeobox domain
CDDcd000860.002211375No hitNo description
PfamPF000467.5E-51375IPR001356Homeobox domain
PfamPF167194.0E-42119246IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MGRPPHNGAP AFRFTAPEVL EMEACLREVN NGIPAREVIC ALAEKFSASP DRTGKVTVNP  60
KQVWNWFQNR RYAQRTRLIK APGKLSVSPL PRGEEAAAAR NVSNSAPVTS GRHAQDGPQL  120
EFEARSARDG AWYDVAAFIS HRMFETNDPE VRVRFSGFGS EEDEWVNVKK CVRLRSLPCE  180
TAECVVVLPG DLILCFQEGK EQALYFDAHV LDAQRRRHDV RGCRCRFLVR YDHDQSEEIV  240
PLRKICRRPE TDYRLQLLYA SKELSSVDLR STPHLGKEAA IVNPNQELKS ADQKIGKQPP  300
LDPNTNTVIA LGALTSQSVN SLAMIQKNPS VIPVMAKEGS ATAATETDPA VNPVNVEKSM  360
AITDVNMGAL ASASGDAQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A8e-471202504134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B8e-471202504134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A8e-471202504134SHH1 SAWADEE
4iur_B8e-471202504134SHH1 SAWADEE
4iut_A8e-471202504134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B8e-471202504134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A8e-471202504134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B8e-471202504134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A8e-471202504134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B8e-471202504134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006878630.10.0protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X3
SwissprotQ8RWJ71e-127SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLW1NHX70.0W1NHX7_AMBTC; Uncharacterized protein
STRINGERM947750.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP16411419
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.11e-116sequence-specific DNA binding transcription factors;sequence-specific DNA binding
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]