PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00011.148 | ||||||||
Common Name | AMTR_s00011p00247840, LOC18422647 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | MYB_related | ||||||||
Protein Properties | Length: 104aa MW: 11683.1 Da PI: 9.4906 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.7 | 2.3e-07 | 13 | 54 | 3 | 42 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcks 42 +WT+ + + +a + + ++ +W+++ar++g g +++++k evm_27.model.AmTr_v1.0_scaffold00011.148 13 SWTAKQNKSFEKALAIYDKDtpdRWHKVAREVG-GTSAEEVKR 54 7********************************.*******97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 1.9E-4 | 10 | 62 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 7.62E-10 | 12 | 67 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.09E-4 | 13 | 60 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009630 | Biological Process | gravitropism | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0010114 | Biological Process | response to red light | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 104 aa Download sequence Send to blast |
MASGSMSRFS SPSWTAKQNK SFEKALAIYD KDTPDRWHKV AREVGGTSAE EVKREYERLI 60 EDLKDIESGK FPDPIYKSSG GGSSRGSKLT EDEERLLRRL KLQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 1e-28 | 1 | 103 | 1 | 93 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Required for female gametophyte development. {ECO:0000269|PubMed:15634699}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006878579.1 | 1e-69 | protein RADIALIS-like 3 | ||||
Swissprot | Q9SIJ5 | 5e-33 | RADL2_ARATH; Protein RADIALIS-like 2 | ||||
TrEMBL | W1NHR1 | 3e-68 | W1NHR1_AMBTC; Uncharacterized protein | ||||
STRING | ERM94724 | 5e-69 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP347 | 12 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.2 | 2e-30 | RAD-like 6 |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00011.148 |
Entrez Gene | 18422647 |
Publications ? help Back to Top | |||
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