PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00010.533
Common NameAMTR_s00010p00267100, LOC18421997
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family MYB
Protein Properties Length: 444aa    MW: 49220.2 Da    PI: 6.6694
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00010.533genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.42.8e-171461148
                                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                              +g+WT+eEd++l+ +++++G g+W++ + + g+ R++k+c++rw +yl
  evm_27.model.AmTr_v1.0_scaffold00010.533 14 KGPWTPEEDQKLLAYIEEHGHGSWRALPVKAGLLRCGKSCRLRWTNYL 61
                                              79******************************99************97 PP
2Myb_DNA-binding52.51.1e-1667112148
                                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                               rg+++ +E++ +++++++lG++ W++Ia +++ +Rt++++k++w+++l
  evm_27.model.AmTr_v1.0_scaffold00010.533  67 RGKFSLQEEQTIIQLHALLGNR-WSAIATHLP-RRTDNEIKNYWNTHL 112
                                               89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.8E-24564IPR009057Homeodomain-like
PROSITE profilePS5129416.254961IPR017930Myb domain
SuperFamilySSF466899.9E-3011108IPR009057Homeodomain-like
SMARTSM007172.7E-141363IPR001005SANT/Myb domain
PfamPF002497.7E-161461IPR001005SANT/Myb domain
CDDcd001672.24E-111661No hitNo description
PROSITE profilePS5129426.15862116IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.1E-2665116IPR009057Homeodomain-like
SMARTSM007172.0E-1666114IPR001005SANT/Myb domain
PfamPF002496.8E-1667112IPR001005SANT/Myb domain
CDDcd001671.11E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010091Biological Processtrichome branching
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MGRSPCCEKV GLKKGPWTPE EDQKLLAYIE EHGHGSWRAL PVKAGLLRCG KSCRLRWTNY  60
LRPDIKRGKF SLQEEQTIIQ LHALLGNRWS AIATHLPRRT DNEIKNYWNT HLKKRLAKMG  120
IDPVTHKPKT DALCLVDGQS KNAATLSHMA QWESARLEAE ARLVRESKLR SASTNHSNSN  180
NNKNNYSKLL QPPLSFSATQ IQQQQPKDCS GLPLCLDVLK VWQGGWQNKI MRCNGQDLAM  240
LESPTSTLSF GGDNNSSLPN PAAVGFGGEN PAAGNEFVEN QMMLGPSDEK EEYLPSLCDQ  300
DEGLKCGGVY SFLQQALRRS SSQNFPLTAN EEEEKEEVTR KLAGNRLEKV DGLFTSLQDM  360
VFPADNSGDF KAGSGFNMEG FMSGDLLVVL ADAHSEPENR LQSSNDQISG ENARANTTEE  420
DHKSYWNNIF NLVNSPPAAS PIF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-26121165108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006827320.10.0transcription factor MYB80
TrEMBLW1NFG10.0W1NFG1_AMBTC; Uncharacterized protein
STRINGERM945570.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.11e-107myb domain protein 16
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]