PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00010.53 | ||||||||
Common Name | AMTR_s00010p00095120 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | ERF | ||||||||
Protein Properties | Length: 288aa MW: 32038.1 Da PI: 4.5868 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.6 | 7.5e-19 | 77 | 127 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +g+W+AeIrdp + r++lg+f t eeAa+a++a + +++g+ evm_27.model.AmTr_v1.0_scaffold00010.53 77 KYRGVRQRP-SGKWAAEIRDP-----HrgIRVWLGTFETVEEAARAYDAKAVEYRGA 127 8********.7*********6.....337*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 8.5E-31 | 76 | 135 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.42 | 77 | 134 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.4E-12 | 77 | 126 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.26E-31 | 77 | 136 | No hit | No description |
SMART | SM00380 | 5.1E-32 | 77 | 140 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.99E-22 | 77 | 136 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.1E-9 | 78 | 89 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-9 | 100 | 116 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 288 aa Download sequence Send to blast |
MSARTTAPSD PGDHQARRQE QEDAIMVRAF QQVISGSSLS PVGLEPEPAP SETYNGSSSN 60 PAEPTADPTL SSSKRRKYRG VRQRPSGKWA AEIRDPHRGI RVWLGTFETV EEAARAYDAK 120 AVEYRGARAK LNFPDDTLPL YQAALPIPRA PEKFNYQFES QPYQPHQQST ELREVGSTSA 180 SISSQGDAQI NEQVNVQYQQ TVQTSDYPVW DMVPNSSSCE HYYSTYESFS SESEFYGSLS 240 APLPQQNQTE GLPVSFATIP LDQDWIFTNP LDEFPFVATT RPPDHIP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-20 | 73 | 134 | 1 | 63 | ATERF1 |
3gcc_A | 5e-20 | 73 | 134 | 1 | 63 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011622680.1 | 0.0 | ethylene-responsive transcription factor ERF112 | ||||
TrEMBL | W1NE63 | 0.0 | W1NE63_AMBTC; Uncharacterized protein | ||||
STRING | ERM94077 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47520.1 | 4e-28 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00010.53 |
Publications ? help Back to Top | |||
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