PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00010.523
Common NameAMTR_s00010p00266320, LOC18422029
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family NAC
Protein Properties Length: 380aa    MW: 42710.8 Da    PI: 6.9869
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00010.523genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM179.96.5e-56181481129
                                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkya 69 
                                               lppGfrFhPtdeel+++yL +kv ++ +++ ++i evd++k+ePwdLp ++k +ekewyfF+ rd+ky+
  evm_27.model.AmTr_v1.0_scaffold00010.523  18 LPPGFRFHPTDEELITHYLSRKVLDSGFTA-KAIGEVDLNKCEPWDLPWRAKMGEKEWYFFCVRDRKYP 85 
                                               79*************************999.89***************888999*************** PP

                                       NAM  70 tgkrknratksgyWkatgkdkevlsk...kgelvglkktLvfykgrapkgektdWvmheyrle 129
                                               tg r+nrat++gyWkatgkdke+++    + +lvg+kktLvfykgrapkgek++Wvmheyrle
  evm_27.model.AmTr_v1.0_scaffold00010.523  86 TGLRTNRATEAGYWKATGKDKEIYRGknsSATLVGMKKTLVFYKGRAPKGEKSNWVMHEYRLE 148
                                               ************************974444445****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.68E-6315172IPR003441NAC domain
PROSITE profilePS5100560.14318172IPR003441NAC domain
PfamPF023659.1E-3019147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MEGDGSVLNK VEEEHIDLPP GFRFHPTDEE LITHYLSRKV LDSGFTAKAI GEVDLNKCEP  60
WDLPWRAKMG EKEWYFFCVR DRKYPTGLRT NRATEAGYWK ATGKDKEIYR GKNSSATLVG  120
MKKTLVFYKG RAPKGEKSNW VMHEYRLEGK FSLYNLPKVS KDEWVICRVF QKSSGGKKIV  180
VTGFMRVNSF GDELNSPLPP LTDSPYKTKP CSDQVQHVTC FSNRAENHRN THPEEGSVMN  240
EYFPSSLFTN NSVDTTNPTS SLYTRTPFQS PFYAPGAQGF HGPRLDSCDQ AILRALLDSH  300
GSDLKPLRLN QGLQKPDYGA SSHQPAMVSI SQETGLSSEI NAEISSVVSN HEMGSRPFHD  360
PEDHPSSNGP VDLDCLWNY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-531517814171NO APICAL MERISTEM PROTEIN
1ut4_B1e-531517814171NO APICAL MERISTEM PROTEIN
1ut7_A1e-531517814171NO APICAL MERISTEM PROTEIN
1ut7_B1e-531517814171NO APICAL MERISTEM PROTEIN
3swm_A1e-531517817174NAC domain-containing protein 19
3swm_B1e-531517817174NAC domain-containing protein 19
3swm_C1e-531517817174NAC domain-containing protein 19
3swm_D1e-531517817174NAC domain-containing protein 19
3swp_A1e-531517817174NAC domain-containing protein 19
3swp_B1e-531517817174NAC domain-containing protein 19
3swp_C1e-531517817174NAC domain-containing protein 19
3swp_D1e-531517817174NAC domain-containing protein 19
4dul_A1e-531517814171NAC domain-containing protein 19
4dul_B1e-531517814171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7752808e-35KC775280.1 Jatropha curcas NAC transcription factor 002 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006827310.10.0NAC domain-containing protein 100
SwissprotQ9FLJ21e-131NC100_ARATH; NAC domain-containing protein 100
TrEMBLW1NFF00.0W1NFF0_AMBTC; Uncharacterized protein
STRINGERM945470.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.11e-133NAC domain containing protein 100
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]