PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00010.503 | ||||||||
Common Name | AMTR_s00010p00264600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | MYB | ||||||||
Protein Properties | Length: 368aa MW: 41265.9 Da PI: 8.851 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.3 | 2.7e-16 | 101 | 146 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v+++G+ +W++Ia+++ gR++k+c++rw++ evm_27.model.AmTr_v1.0_scaffold00010.503 101 RGHWRPAEDAKLKELVALYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 146 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 55 | 1.8e-17 | 153 | 196 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++++eE+e+l a++++G++ W+ Iar ++ gRt++ +k++w+ evm_27.model.AmTr_v1.0_scaffold00010.503 153 RRAFSEEEEERLMAAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 196 678*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.632 | 96 | 147 | IPR017930 | Myb domain |
SMART | SM00717 | 2.2E-14 | 100 | 149 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.24E-27 | 101 | 194 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 6.7E-16 | 101 | 146 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.0E-26 | 102 | 154 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.76E-13 | 104 | 145 | No hit | No description |
PROSITE profile | PS51294 | 26.846 | 148 | 202 | IPR017930 | Myb domain |
SMART | SM00717 | 4.4E-14 | 152 | 200 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.9E-14 | 153 | 195 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-20 | 155 | 201 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.26E-11 | 155 | 195 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010199 | Biological Process | organ boundary specification between lateral organs and the meristem | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 368 aa Download sequence Send to blast |
MTTKYINDSL NLRLHSQSQS MGLFSDKASS SSSSLSLYET RISLSHGFGC SGSSSNESYS 60 KSERGLNAID EGSNHNPIDE TMSENLVLKE PDSGQSKLCA RGHWRPAEDA KLKELVALYG 120 PQNWNLIAEK LEGRSGKSCR LRWFNQLDPR INRRAFSEEE EERLMAAHRL YGNKWAMIAR 180 LFPGRTDNAV KNHWHVIMAR KYREQSSAYR RRKLTQAGVQ RRLEGGGVVS LSNPTSFLSP 240 PSPSVTSGRG DSRSSCRPPV DLLSGIKKAK NSFFSNGGKR WNHNREHDDD DDEAMTNSLS 300 TAFISHQHDH HHPSLMAMMM MHHHHHQEQT APVYYSLQAS ESPEKSSHHF ESTVSLPFID 360 FLGVGAT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-32 | 101 | 201 | 7 | 107 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00222 | DAP | Transfer from AT1G69560 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006827290.2 | 0.0 | transcription factor MYB44 | ||||
TrEMBL | W1NFC8 | 0.0 | W1NFC8_AMBTC; Uncharacterized protein | ||||
STRING | ERM94527 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69560.1 | 2e-76 | myb domain protein 105 |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00010.503 |
Publications ? help Back to Top | |||
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