PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00010.496 | ||||||||
Common Name | AMTR_s00010p00264070, LOC18422296 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | Dof | ||||||||
Protein Properties | Length: 477aa MW: 52026.9 Da PI: 6.3469 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 122.4 | 1.6e-38 | 124 | 185 | 2 | 63 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 ++k l+c+rC+s +tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+sss evm_27.model.AmTr_v1.0_scaffold00010.496 124 PSKLLPCARCNSLETKFCYYNNYNVNQPRHFCKSCQRYWTAGGTMRNVPVGAGRRKNKHSSS 185 678899****************************************************9975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 3.0E-28 | 119 | 181 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 7.0E-31 | 127 | 182 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 27.941 | 128 | 182 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 130 | 166 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 477 aa Download sequence Send to blast |
MPAEISDPAI KLFGKTIQVL TKKEIQAKED VRSEGAANDK EFSHNSNSKD NSSTKERTHD 60 HEHEDQEEPG DTGSSSEPKN NPTTNQDTTE SPEQEDPINP QEVGGGEEEN QELGIGQERT 120 NKKPSKLLPC ARCNSLETKF CYYNNYNVNQ PRHFCKSCQR YWTAGGTMRN VPVGAGRRKN 180 KHSSSSHYRQ IPSLTPDGLP TSCSNNYESS HIIQNGVAKP TGTVLSFGSD IPLCESVASV 240 LNLAEHRVAA TRRNGLIKAE EEKPQENGED ISCGSSSLTS TNSMDKEQNR VQFQDPNYAT 300 GFASGYSGAP WPYPWSPVQW STPTIGSPAF CAPSIPLSFY HGSYWGCIPG GWPVPWVANG 360 DGGLTSPTSL SNNSSLNSPT LGKHPRDRNL DNQSKTDSCL WVPKTLRIED SGEAVNSSIW 420 ATLKANKEKV DTISGGGIFK AFHSKGDDKN RSSEASQVLH ANPAALSRSH NFHENF* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006827283.1 | 0.0 | cyclic dof factor 1 | ||||
TrEMBL | W1NH69 | 0.0 | W1NH69_AMBTC; Uncharacterized protein | ||||
STRING | ERM94520 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP38 | 17 | 445 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G39660.2 | 2e-67 | cycling DOF factor 2 |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00010.496 |
Entrez Gene | 18422296 |
Publications ? help Back to Top | |||
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