PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm_27.model.AmTr_v1.0_scaffold00010.432

Common Name

AMTR_s00010p00260100

Organism

Amborella trichopoda

Taxonomic ID

13333

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

NAC

Protein Properties

Length: 346aa MW: 38414.9 Da PI: 8.3673

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00010.432	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	97.4	2.1e-30	10	87	52	128
NAM 52 kaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgekt 119 + +ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d++++s+ +++ +glkk+Lvfykgra kg kt evm_27.model.AmTr_v1.0_scaffold00010.432 10 TIGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSeGSKCIGLKKSLVFYKGRAAKGIKT 78 45789************************************956677**************** PP NAM 120 dWvmheyrl 128 dW+mhe+rl evm_27.model.AmTr_v1.0_scaffold00010.432 79 DWMMHEFRL 87 *****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	37.835	1	118	IPR003441	NAC domain
Pfam	PF02365	6.3E-13	3	87	IPR003441	NAC domain
SuperFamily	SSF101941	8.37E-35	9	118	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
MFYVREEMAT IGEKEWYFYC PRDRKYRNSA RPNRVTGAGF WKATGTDRPI YSSEGSKCIG 60 LKKSLVFYKG RAAKGIKTDW MMHEFRLPSL TDSNSPKKPL DKNLPANDSW AICRIFKKTN 120 SMTQRALSQS WVSPLPETNN QDIFSNNISY TNFSSENISC TSEAGPGTQF YSEILHASNP 180 DFSHLNLASY KPINSTLSKP FPLTQTSAPE FAFSPLDMLG PAKSTMDIAS MLLNLSPQIL 240 GDGGKASANV EFGQQLQNQS SSFGVNLQPQ MNENSQNGEG EACLTKRENN SRDVSGNQWC 300 NARAGGFPLN LPSALFDAWK PNWSWDCSSC PSEMSTNYST SKSYT*

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

MFYVREEMAT IGEKEWYFYC PRDRKYRNSA RPNRVTGAGF WKATGTDRPI YSSEGSKCIG  60
LKKSLVFYKG RAAKGIKTDW MMHEFRLPSL TDSNSPKKPL DKNLPANDSW AICRIFKKTN  120
SMTQRALSQS WVSPLPETNN QDIFSNNISY TNFSSENISC TSEAGPGTQF YSEILHASNP  180
DFSHLNLASY KPINSTLSKP FPLTQTSAPE FAFSPLDMLG PAKSTMDIAS MLLNLSPQIL  240
GDGGKASANV EFGQQLQNQS SSFGVNLQPQ MNENSQNGEG EACLTKRENN SRDVSGNQWC  300
NARAGGFPLN LPSALFDAWK PNWSWDCSSC PSEMSTNYST SKSYT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-34	9	121	66	168	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-34	9	121	66	168	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-34	9	121	66	168	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-34	9	121	66	168	NO APICAL MERISTEM PROTEIN
3swm_A	2e-34	9	121	69	171	NAC domain-containing protein 19
3swm_B	2e-34	9	121	69	171	NAC domain-containing protein 19
3swm_C	2e-34	9	121	69	171	NAC domain-containing protein 19
3swm_D	2e-34	9	121	69	171	NAC domain-containing protein 19
3swp_A	2e-34	9	121	69	171	NAC domain-containing protein 19
3swp_B	2e-34	9	121	69	171	NAC domain-containing protein 19
3swp_C	2e-34	9	121	69	171	NAC domain-containing protein 19
3swp_D	2e-34	9	121	69	171	NAC domain-containing protein 19
4dul_A	2e-34	9	121	66	168	NAC domain-containing protein 19
4dul_B	2e-34	9	121	66	168	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269\|PubMed:19081078}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006827219.2	0.0	putative NAC domain-containing protein 94
Swissprot	Q9ZVH0	2e-67	FEZ_ARATH; Protein FEZ
TrEMBL	W1NG41	0.0	W1NG41_AMBTC; Uncharacterized protein
STRING	ERM94456	0.0	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP17	15	800

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39820.1	8e-70	NAC domain containing protein 94

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00010.432

Publications ? help Back to Top
Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323] Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342]