PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00010.349 | ||||||||
Common Name | AMTR_s00010p00249970, LOC18422401 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | MYB_related | ||||||||
Protein Properties | Length: 445aa MW: 49853.7 Da PI: 9.6548 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.4 | 1.6e-08 | 131 | 172 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +WT+eE ++l d+++q+ + + Ia ++++ R+ +++ksr++ evm_27.model.AmTr_v1.0_scaffold00010.349 131 NWTKEETDQLFDLCEQFDLR-FIVIADRFPTSRSTEELKSRYY 172 8*******************.*********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF16282 | 1.3E-30 | 104 | 178 | IPR032563 | DAMP1, SANT/Myb-like domain |
SMART | SM00717 | 2.6E-7 | 128 | 177 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.5E-6 | 130 | 174 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.43E-6 | 130 | 176 | IPR009057 | Homeodomain-like |
CDD | cd11658 | 4.08E-17 | 132 | 174 | No hit | No description |
Pfam | PF05499 | 5.6E-6 | 310 | 372 | IPR008468 | DNA methyltransferase 1-associated 1 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0000812 | Cellular Component | Swr1 complex | ||||
GO:0035267 | Cellular Component | NuA4 histone acetyltransferase complex | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 445 aa Download sequence Send to blast |
MADAKDILGL PKTHFPSTQE KRPKPPKESQ RKPDGVSREV YALMGGLPPL MPTLDISQLK 60 RKPPSDKEKI SWQWLPFTSS ARTDNLKLYH WVKIVNGVPP TGDYSFAKYN KSVDIVRYTD 120 EEYEKYLTDP NWTKEETDQL FDLCEQFDLR FIVIADRFPT SRSTEELKSR YYAVSRALVI 180 AKAPPSGDVS GHPLVKDPYN ITHEVERKRQ LSTVLSNPKQ PERKDAEVLA EAKRVADLRI 240 SGKDAEEPEL PANTESVAPD AVAVDCVSPS PIPQPPASTA DSASTPASLR MLRVYLRTTL 300 LEQMVQAASS SAGLRTIKRV DQTLQELGVL KPKVPTKAVC AEHIELRKEI LTLLNLQKQV 360 QYKEAEVSTF RDNPYSDTIP TPSPPKRSHR GGDQDRLFIR DSDGFSGERV GKREHKRKAP 420 GRYPEAPPSP PHSKRARKMK ASDG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3hm5_A | 3e-21 | 103 | 188 | 4 | 93 | DNA methyltransferase 1-associated protein 1 |
4iej_A | 3e-21 | 103 | 188 | 4 | 93 | DNA methyltransferase 1-associated protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. {ECO:0000305|Ref.5}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006827136.1 | 0.0 | SWR1-complex protein 4 | ||||
Swissprot | Q8VZL6 | 0.0 | SWC4_ARATH; SWR1-complex protein 4 | ||||
TrEMBL | W1NFX0 | 0.0 | W1NFX0_AMBTC; Uncharacterized protein | ||||
STRING | ERM94373 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6713 | 8 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47210.1 | 1e-173 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00010.349 |
Entrez Gene | 18422401 |
Publications ? help Back to Top | |||
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