PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | evm_27.model.AmTr_v1.0_scaffold00010.303 | ||||||||
Common Name | AMTR_s00010p00240320, LOC18422355 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 164aa MW: 18065.4 Da PI: 6.5252 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52.5 | 1.2e-16 | 22 | 64 | 2 | 48 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaia 48 gy GVr+++ +gr++AeIr p++ + r++lg+f+taeeAa a++ evm_27.model.AmTr_v1.0_scaffold00010.303 22 GYLGVRRRP-WGRYAAEIRNPNT---KERHWLGTFDTAEEAALAYDL 64 799******.**********933...5******************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 8.5E-18 | 22 | 80 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.3E-24 | 22 | 86 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.218 | 22 | 80 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.8E-25 | 23 | 79 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.9E-9 | 23 | 34 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.3E-11 | 23 | 65 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.35E-22 | 26 | 79 | No hit | No description |
PRINTS | PR00367 | 4.9E-9 | 45 | 61 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 164 aa Download sequence Send to blast |
MAGLGHGVQW PSRRRRGREG GGYLGVRRRP WGRYAAEIRN PNTKERHWLG TFDTAEEAAL 60 AYDLTSISFS GLGKARTNFV YPILQPVPPP PPPRTPLECR VVEAVAPDND DSWQIATILQ 120 SFRQVDEQGS SPSLLDSLGL LCMVDDQTSL WYIGEESGKL TLG* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-15 | 17 | 71 | 9 | 64 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006827090.1 | 1e-117 | ethylene-responsive transcription factor LEP | ||||
TrEMBL | W1NEW7 | 1e-116 | W1NEW7_AMBTC; Uncharacterized protein | ||||
STRING | ERM94327 | 1e-117 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G13910.1 | 7e-23 | ERF family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | evm_27.model.AmTr_v1.0_scaffold00010.303 |
Entrez Gene | 18422355 |
Publications ? help Back to Top | |||
---|---|---|---|
|