PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | evm_27.model.AmTr_v1.0_scaffold00010.260 | ||||||||
Common Name | AMTR_s00010p00229220 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 243aa MW: 26452 Da PI: 6.8015 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 44.6 | 3.1e-14 | 197 | 241 | 3 | 47 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47 + +r++r++kNRe+A rsR+RK+a++++Le + +L + N +Lkk evm_27.model.AmTr_v1.0_scaffold00010.260 197 AERRQKRMIKNRESAARSRARKQAYTKQLEHELSKLRTTNVMLKK 241 568****************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 4.2E-4 | 195 | 242 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.875 | 197 | 241 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.8E-12 | 197 | 241 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14707 | 5.24E-22 | 199 | 241 | No hit | No description |
SuperFamily | SSF57959 | 1.2E-9 | 199 | 240 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 6.3E-12 | 199 | 241 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 202 | 217 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 243 aa Download sequence Send to blast |
MGYDATLHQF QPLARQSSIF NLAIEELQSH GGDLSKALTT MNIDEFFKGA CPSSDEAPGS 60 NSGVAVTLED FLQRAAGLVD ENLNAPAMSP ATNTLPLMGF NQAQALSGQG LHGQPAEFLQ 120 YPMNVPSIEQ QQGLMVSYGA PMHVSGAYGV GGSVPLMDAG YGEMPLPVPS PMMGFSSDTQ 180 TPRQRWHVAD EVLDKAAERR QKRMIKNRES AARSRARKQA YTKQLEHELS KLRTTNVMLK 240 KIT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020518837.1 | 0.0 | ABSCISIC ACID-INSENSITIVE 5-like protein 2 isoform X1 | ||||
TrEMBL | W1NGG2 | 0.0 | W1NGG2_AMBTC; Uncharacterized protein (Fragment) | ||||
STRING | ERM94284 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP10063 | 7 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G56850.1 | 3e-27 | ABA-responsive element binding protein 3 |
Link Out ? help Back to Top | |
---|---|
Phytozome | evm_27.model.AmTr_v1.0_scaffold00010.260 |
Publications ? help Back to Top | |||
---|---|---|---|
|