PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00010.217
Common NameAMTR_s00010p00214260
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family M-type_MADS
Protein Properties Length: 108aa    MW: 12287.3 Da    PI: 10.6478
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00010.217genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.68.1e-29958150
                                              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                                    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                                              k+ien++nrqvtfskRrng++KKA+ELS+LCd+++a+i+fs++g+l  +s
  evm_27.model.AmTr_v1.0_scaffold00010.217  9 KKIENSTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRLSQFS 58
                                              78*********************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.1E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.758161IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.93E-31283IPR002100Transcription factor, MADS-box
CDDcd002651.88E-35275No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-27323IPR002100Transcription factor, MADS-box
PfamPF003197.3E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-273859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 108 aa     Download sequence    Send to blast
MGRVKLQIKK IENSTNRQVT FSKRRNGLIK KAYELSILCD IDIALIMFSP SGRLSQFSGK  60
KRIEDVLARY VNLPDHDRGG PLQNQEYLNR ALKKLKCESD IASHLTR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-19175174MEF2 CHIMERA
6byy_B1e-19175174MEF2 CHIMERA
6byy_C1e-19175174MEF2 CHIMERA
6byy_D1e-19175174MEF2 CHIMERA
6bz1_A1e-19175174MEF2 CHIMERA
6bz1_B1e-19175174MEF2 CHIMERA
6bz1_C1e-19175174MEF2 CHIMERA
6bz1_D1e-19175174MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms a heterodimer with the MADS-box protein AGL30 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006827004.23e-73agamous-like MADS-box protein AGL66
SwissprotQ1PFC22e-47AGL66_ARATH; Agamous-like MADS-box protein AGL66
TrEMBLW1NFJ11e-72W1NFJ1_AMBTC; Uncharacterized protein
STRINGERM942412e-73(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77980.18e-50AGAMOUS-like 66
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]
  2. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]