PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00009.85
Common NameAMTR_s00009p00147970, LOC18422946
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family ERF
Protein Properties Length: 143aa    MW: 15857.2 Da    PI: 7.8282
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00009.85genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.51.1e-201969255
                                      AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                                             +y+GVr+++ +g+++AeIrd    + + +r++lg+f+taeeAa+a+++a+ +++g
  evm_27.model.AmTr_v1.0_scaffold00009.85 19 HYRGVRRRP-WGKYAAEIRDS---NrHGARVWLGTFDTAEEAARAYDRAAYAMRG 69
                                             7********.**********4...3234*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.85E-181877No hitNo description
SMARTSM003803.2E-341983IPR001471AP2/ERF domain
SuperFamilySSF541714.77E-241979IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.9E-321978IPR001471AP2/ERF domain
PfamPF008474.5E-161969IPR001471AP2/ERF domain
PROSITE profilePS5103223.8281977IPR001471AP2/ERF domain
PRINTSPR003673.9E-122031IPR001471AP2/ERF domain
PRINTSPR003673.9E-124359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MTSREEKNEE VGEREQGAHY RGVRRRPWGK YAAEIRDSNR HGARVWLGTF DTAEEAARAY  60
DRAAYAMRGS LAILNFPREI HARPPTGSSS SSSTSHSGSS SSSVGGNPTS STKKEVIEFE  120
YLDDSYLEEL LRSGEEKDRR GK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-362012515113Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006827482.14e-99ethylene-responsive transcription factor ERF096
SwissprotQ9LTC52e-40ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLW1NHC49e-98W1NHC4_AMBTC; Uncharacterized protein
STRINGERM948981e-98(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43410.13e-23ERF family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]
  2. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]