PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00009.52
Common NameAMTR_s00009p00109990, LOC18422777
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family TALE
Protein Properties Length: 788aa    MW: 87048.9 Da    PI: 7.2814
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00009.52genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.45.7e-096036401954
                                              HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                                 Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                              Fe   ++yp+ +++  LA+++gL+ +qV++WF N R +
  evm_27.model.AmTr_v1.0_scaffold00009.52 603 FEHflHPYPTDNDKHVLASQTGLSRNQVSNWFINARVR 640
                                              554459******************************88 PP
2BELL102.72.7e-33458527372
                                     BELL   3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                                               e +kkk++L+ l +eV++rY+ y++q+q vissFe +agl +a+pYtslAlka+S+hFrcLk+ i++q+
  evm_27.model.AmTr_v1.0_scaffold00009.52 458 IEFHKKKTRLMALFDEVYRRYRIYQHQMQSVISSFESIAGLSAATPYTSLALKAMSKHFRCLKNVISDQL 527
                                              6899***************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.5E-39358525IPR006563POX domain
PfamPF075268.7E-39363524IPR006563POX domain
PROSITE profilePS5007112.001581644IPR001356Homeobox domain
SMARTSM003897.4E-9584648IPR001356Homeobox domain
CDDcd000862.90E-11584645No hitNo description
SuperFamilySSF466893.68E-16586650IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-26587648IPR009057Homeodomain-like
PfamPF059201.2E-17601640IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010229Biological Processinflorescence development
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 788 aa     Download sequence    Send to blast
MAEELDDSLS RIHRFGAQNH VAQQSRREKL RVQNTSNLER ETVGLPSHLI NPLCDSSMVS  60
SEMLNFRAQR VSSEVNSEVV PSDGGLVQNP TLWKGLIAPQ NCDWFLNHSQ GNGASPSSLN  120
NHDSFLTPMF GILSKNLKDG NSSAYQLLLM NNEYNNIGYP QDLQVSMASQ NPNPNPIWSS  180
KDVYDGENQK PYTEFSRNFR GFEQSSQGLD LGSPRRDIKE SVASGLWQES ASGLVLPSYG  240
NQSSLSGLSE RPQTHQWCNG EGEAQIVRKQ DGHDARSQSL ALSLASHRST DTQLPQFEDG  300
FNNSQELVVR ENRSEGSFPN PFYGSTSRER NFSPLSQGYI GGSSMDAQRS AGPLGPFTGY  360
ATILKSSKFL RPAQLILSEF CSVTKGAIEC GMKKPGINSD SIERGSMVLR DGVNVDSGGI  420
GRNGNSCVSS SSDYPTSIEG GNGGGDKSGG AVCAGDGIEF HKKKTRLMAL FDEVYRRYRI  480
YQHQMQSVIS SFESIAGLSA ATPYTSLALK AMSKHFRCLK NVISDQLKQM SSLLGEEESM  540
IPAGGPNFGK GDTIPRLRFL DQRIRHQQQQ RLMGLEHARH QHVWRPQRGL PERSVAVLRA  600
WLFEHFLHPY PTDNDKHVLA SQTGLSRNQV SNWFINARVR LWKPMVEEIH MLESKESAEF  660
DQNSSKNDHS PANPEQASKK QGKQSIEAQS SEDRSFSVSS RVGDLEQPSK RPKMDHCRIP  720
TSYVDFPVYP TGVGAVSLTL GLQHSGVQEP VSFGLHENSS SSGFVVENLQ QQLRKQIPGH  780
ILHDFVG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A6e-15590648563Homeobox protein Meis2
4xrm_B6e-15590648563Homeobox protein Meis2
4xrs_A4e-15590647158Homeobox protein Meis1
4xrs_B4e-15590647158Homeobox protein Meis1
5bng_A6e-15590648159Homeobox protein Meis2
5bng_B6e-15590648159Homeobox protein Meis2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006827449.10.0BEL1-like homeodomain protein 4
RefseqXP_020527432.10.0BEL1-like homeodomain protein 4
TrEMBLW1NI560.0W1NI56_AMBTC; Uncharacterized protein
STRINGERM948650.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP13316172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23760.32e-73BEL1-like homeodomain 4
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]