PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00009.427 | ||||||||
Common Name | AMTR_s00009p00268560, LOC18423161 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | ERF | ||||||||
Protein Properties | Length: 466aa MW: 51221.9 Da PI: 7.8408 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.4 | 4.1e-19 | 223 | 272 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++ + kl+g evm_27.model.AmTr_v1.0_scaffold00009.427 223 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDREAYKLRG 272 59******9.**********955...5*************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.84E-32 | 222 | 282 | No hit | No description |
PROSITE profile | PS51032 | 22.945 | 223 | 280 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.7E-38 | 223 | 286 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.1E-32 | 223 | 281 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-23 | 223 | 281 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.0E-12 | 224 | 272 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.4E-11 | 224 | 235 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.4E-11 | 246 | 262 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:2000070 | Biological Process | regulation of response to water deprivation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 466 aa Download sequence Send to blast |
MAFASGSGSG SSSSLQETSF GTQGGFPLVL EGQKQLVMEG QGPLFYDASA YSRPLKKARS 60 PDQSQNHPSR PSSSSSALLP LSQIPPPSSV ARLFPFACDS SCSSSPTFSQ MGLGGIPPFF 120 HLQQQQQQQQ QPHQMIAFAP PPPPGSSSSP GSRSSSNSMV MGSHQQQLHH MYQHQRYHEQ 180 LFRYWSDALN LSPRGRAAIL RQQQQQMQMQ DRRSLALLRP TKLYRGVRQR HWGKWVAEIR 240 LPRNRTRLWL GTFDTAEEAA LAYDREAYKL RGDNARLNFP DLFLHKGRGG GDDSTTPPQP 300 QQQLPDSSSS SSSSSSPLPP PPQPPAAALE KSPVLEQRNR DNSNVKALEE QQQLSRPVHG 360 FPASPEFVLG DMDMDEAWFD AIPALGLEGV SWDDDHVEHH HHQLLRRGGG EPSVLLPPSH 420 PPPIDFLSNA ATTPLNTTTT VPLPDCFQSS VASSSSSSYV WRRDT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-19 | 222 | 280 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006827824.1 | 0.0 | ethylene-responsive transcription factor ERF054 | ||||
TrEMBL | W1NJA6 | 0.0 | W1NJA6_AMBTC; Uncharacterized protein | ||||
STRING | ERM95240 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20880.1 | 4e-38 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00009.427 |
Entrez Gene | 18423161 |
Publications ? help Back to Top | |||
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