PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00009.357
Common NameAMTR_s00009p00263240
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family MYB
Protein Properties Length: 478aa    MW: 53269.5 Da    PI: 5.6124
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00009.357genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.51.3e-174793148
                                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                              +g+WT+eEd +l +avkq+ g++Wk Ia++++  R + qc +rwqk+l
  evm_27.model.AmTr_v1.0_scaffold00009.357 47 KGNWTEEEDAILMQAVKQFNGKNWKQIAKCFN-DRADVQCLHRWQKVL 93
                                              79******************************.************986 PP
2Myb_DNA-binding56.28.1e-1899144147
                                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                               +g+WT+eEd+ +v+ v++lG++ W+ +a+ ++ gR +kqc++rw++ 
  evm_27.model.AmTr_v1.0_scaffold00009.357  99 KGPWTKEEDDEIVKQVEKLGTKKWSVVAQSLP-GRIGKQCRERWYNQ 144
                                               79******************************.************96 PP
3Myb_DNA-binding53.36.3e-17151193145
                                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
                           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                                               + +WT+eEd  l++a++ +G++ W+ Ia+ ++ gRt++++k++w+
  evm_27.model.AmTr_v1.0_scaffold00009.357 151 KEPWTQEEDCVLIHAHQIYGNK-WAEIAKFIP-GRTDNSIKNYWN 193
                                               679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.1164293IPR017930Myb domain
SuperFamilySSF466894.52E-1945107IPR009057Homeodomain-like
SMARTSM007174.4E-144695IPR001005SANT/Myb domain
CDDcd001672.78E-124993No hitNo description
Gene3DG3DSA:1.10.10.602.1E-2249110IPR009057Homeodomain-like
PfamPF139217.7E-1750107No hitNo description
PROSITE profilePS5129429.00294149IPR017930Myb domain
SuperFamilySSF466891.02E-3196192IPR009057Homeodomain-like
SMARTSM007171.5E-1598147IPR001005SANT/Myb domain
CDDcd001671.59E-13101143No hitNo description
Gene3DG3DSA:1.10.10.604.5E-24111152IPR009057Homeodomain-like
SMARTSM007171.2E-17150198IPR001005SANT/Myb domain
PROSITE profilePS5129421.471150200IPR017930Myb domain
PfamPF002495.3E-15151193IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-24153200IPR009057Homeodomain-like
CDDcd001672.18E-13153193No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MEPGSVEEVK EEFGSVEIPI MLDNGSTIDQ YSITRRRTNG PTKRSTKGNW TEEEDAILMQ  60
AVKQFNGKNW KQIAKCFNDR ADVQCLHRWQ KVLNPDVVKG PWTKEEDDEI VKQVEKLGTK  120
KWSVVAQSLP GRIGKQCRER WYNQLNPAIK KEPWTQEEDC VLIHAHQIYG NKWAEIAKFI  180
PGRTDNSIKN YWNCTMKKKL QKQSNVTPLL STSSLSTAGE GLDRSIILAN ENSECSAVTS  240
GQNLGSEVCP ETSSVNLSLL SANQELKPNY NEVHESLKEK TDDNSVGPDL GLFSRCEGNN  300
SRRVSSESTD NENSTRDEVS LTLSLGSLDY TPGPLRNSCI SSVNDDQSRS YSNSIPSLLN  360
SRGTMPSVTS HFLSSNLDNV SPEDILENAA RSFTCTPSIM RKRPLEICAK DETPGSGLRI  420
NDIGRLRKKL FLSPQYRSKS TCAVPVESAD ENILDFPDLD ESLTTKNGLK SISKDHE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C7e-64472006159MYB PROTO-ONCOGENE PROTEIN
1h89_C7e-64472006159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020525099.10.0transcription factor MYB3R-5 isoform X2
TrEMBLW1NJ450.0W1NJ45_AMBTC; Uncharacterized protein
STRINGERM951700.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.11e-83Homeodomain-like protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]