PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00009.125
Common NameAMTR_s00009p00195580
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family C2H2
Protein Properties Length: 215aa    MW: 23922.5 Da    PI: 7.94
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00009.125genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.000123860123
                                              EEETTTTEEESSHHHHHHHHHHT CS
                                   zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                              y+C+ C++ F++   L  H++ H
  evm_27.model.AmTr_v1.0_scaffold00009.125 38 YSCSFCKREFRSAQALGGHMNIH 60
                                              99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.31E-63564No hitNo description
Gene3DG3DSA:3.30.160.606.8E-43662IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00673860IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.1983865IPR007087Zinc finger, C2H2
PfamPF139122.1E-63861IPR007087Zinc finger, C2H2
PROSITE patternPS0002804060IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MWTSTKPSPN PHDPSPRFRE TPCFPDAFSC DIWPPRSYSC SFCKREFRSA QALGGHMNIH  60
RRDRARLRQS QSDLQTQNPN PNPNPNPNPN PDPSPDGSPK SFFLFPSSGA APTLSLTQQP  120
LHHHLSPIYS SPFSCSSSSP SSTTDVKGSH PSMKSASDSS HFKESRFGLL GKREEVEGSN  180
EERAVIRRRF IDTTLFIGLR GEDSIEDLDL ELRL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-133360229superman protein
2l1o_A2e-133360229Transcriptional regulator SUPERMAN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020527167.11e-155transcriptional regulator SUPERMAN-like
TrEMBLW1NHG51e-153W1NHG5_AMBTC; Uncharacterized protein
STRINGERM949381e-154(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5761581
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.11e-20C2H2 family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]