PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00008.240
Common NameAMTR_s00008p00268530, LOC18423410
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family Trihelix
Protein Properties Length: 275aa    MW: 30979.4 Da    PI: 10.3489
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00008.240genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix69.85.2e-2245131286
                                  trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergf...erspkqCkekwenlnkrykkike 66 
                                               W++qe+ +Li+a++e++ +l+rg+lk+ +Weev++ +  + gf   +++++qC++k+e+l+kry+ +++
  evm_27.model.AmTr_v1.0_scaffold00008.240  45 WSHQETAHLIDAYQEKWYSLKRGQLKARHWEEVASSVaLRCGFncpSKTSTQCRHKIEKLRKRYRTERQ 113
                                               ***********************************9987788855578********************* PP

                                  trihelix  67 gekkrtsessstcpyfdqle 86 
                                               ++++   + s+++++fd+l+
  evm_27.model.AmTr_v1.0_scaffold00008.240 114 RAGSV--DPSTKWVFFDRLD 131
                                               ***96..44558******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.600.00141108IPR009057Homeodomain-like
PROSITE profilePS500906.74843105IPR017877Myb-like domain
PfamPF138372.5E-2244133No hitNo description
SMARTSM005953.7E-852138IPR006578MADF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MTASTAEPAP VLVLAMPASS SSARDPSISP PPLPLPPKKQ PPGPWSHQET AHLIDAYQEK  60
WYSLKRGQLK ARHWEEVASS VALRCGFNCP SKTSTQCRHK IEKLRKRYRT ERQRAGSVDP  120
STKWVFFDRL DQMEKGSSTT HRPPPPPPPP DHDSDTTDNE TDNNNNMRSL HHLLLEQPDP  180
PASTRPIPPR FVVGKRSSRP PAEPLSELVG VVRSLGEGFL RIEHMKMELL REVERGRMEM  240
EMKRTQMVLE SQRHVADLIA KAFVARKKSK SSDK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006828075.10.0trihelix transcription factor ASIL1
TrEMBLW1NJ440.0W1NJ44_AMBTC; Uncharacterized protein
STRINGERM954910.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP40591122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.11e-29Trihelix family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]