PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00007.392 | ||||||||
Common Name | AMTR_s00007p00268460, LOC18433763 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | ERF | ||||||||
Protein Properties | Length: 214aa MW: 22791.1 Da PI: 4.6235 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.6 | 6.3e-18 | 31 | 79 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +kGVr +k +g+WvAe+r p++ r r++lg+++ +e+Aa+a++aa +l+g evm_27.model.AmTr_v1.0_scaffold00007.392 31 FKGVRMRK-WGKWVAEVRLPNS---RERIWLGSYDAPEKAARAYDAAVFCLRG 79 8*****99.*******999833...5*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.64E-27 | 29 | 89 | No hit | No description |
SuperFamily | SSF54171 | 7.19E-21 | 30 | 88 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 5.4E-29 | 30 | 88 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.694 | 30 | 87 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.1E-34 | 30 | 93 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.2E-8 | 31 | 42 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.7E-12 | 31 | 79 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.2E-8 | 53 | 69 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MVRPSSSSGT RTRPGRRENS SSDSGGSGQI FKGVRMRKWG KWVAEVRLPN SRERIWLGSY 60 DAPEKAARAY DAAVFCLRGP SAKLNFPANP PEISAAGSLS PAQIQLVAAR FAHEGPPPTS 120 GATSDSPGMS GPERQEPSEG NTSEHSEPLP PPPPPIDWPL MDEFLPESNG GGVFHPSLEG 180 FTVGNFIPTE EEEEAPEAGD AGYYEAPTGL WTF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-14 | 23 | 87 | 2 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006843906.1 | 1e-152 | ethylene-responsive transcription factor ERF017 | ||||
TrEMBL | W1PD79 | 1e-150 | W1PD79_AMBTC; Uncharacterized protein | ||||
STRING | ERN05581 | 1e-151 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19210.1 | 1e-41 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00007.392 |
Entrez Gene | 18433763 |
Publications ? help Back to Top | |||
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