PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00007.391
Common NameAMTR_s00007p00268280, LOC18433762
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family ERF
Protein Properties Length: 203aa    MW: 22106.3 Da    PI: 4.6453
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00007.391genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.24.8e-192575155
                                       AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                              s++kG+r +k +g+Wv+e+r p++   r r++lg+++tae+Aa+a++aa  +l+g
  evm_27.model.AmTr_v1.0_scaffold00007.391 25 SKFKGIRKRK-WGKWVSEVRLPNS---RERIWLGSYDTAEKAARAYDAAVFCLRG 75
                                              79*****999.*******999833...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.19E-212585IPR016177DNA-binding domain
PfamPF008473.9E-122575IPR001471AP2/ERF domain
CDDcd000181.51E-292585No hitNo description
Gene3DG3DSA:3.30.730.102.8E-292684IPR001471AP2/ERF domain
PROSITE profilePS5103222.012683IPR001471AP2/ERF domain
SMARTSM003802.7E-322689IPR001471AP2/ERF domain
PRINTSPR003671.9E-92738IPR001471AP2/ERF domain
PRINTSPR003671.9E-94965IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MVKSSTGAMA ASTSRKTDCS GYNGSKFKGI RKRKWGKWVS EVRLPNSRER IWLGSYDTAE  60
KAARAYDAAV FCLRGPTAHF NFPANHPKIQ SSGRLTADEI RAVAAQFANE APAPTSTSTS  120
TVKDPPESPV ESEQTVQESD SNWSFIESLL SDSSNSGFSG VDFNFPCPLL DDFPSENLTF  180
PAVDYDGFED SAFSDDSLLW SF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-1625831372Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00151DAPTransfer from AT1G19210Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006843905.11e-147ethylene-responsive transcription factor ERF017
TrEMBLW1PET21e-146W1PET2_AMBTC; Uncharacterized protein
STRINGERN055801e-147(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.15e-41ERF family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]