PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00007.338
Common NameAMTR_s00007p00263040, LOC18433708
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family Trihelix
Protein Properties Length: 333aa    MW: 36045.8 Da    PI: 10.0205
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00007.338genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix51.82.1e-1684171186
                                  trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkik 65 
                                               +W++  + +Li+a  e+  +l+rg+lk+++W++v++++      ++  ++ +qCk++++ l+k+yk +k
  evm_27.model.AmTr_v1.0_scaffold00007.338  84 CWSEGATATLIDAWGERYIELNRGNLKQKHWKDVAAAVscreDCTKTPKTDVQCKNRLDTLKKKYKIEK 152
                                               7*************************************87666667777888***************** PP

                                  trihelix  66 egekkrtsessstcpyfdqle 86 
                                               +   ++   +ss++p+f++l+
  evm_27.model.AmTr_v1.0_scaffold00007.338 153 AKILNG--ATSSKWPFFHRLD 171
                                               999987..67779******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138379.8E-2682173No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MGVAPPPTPT NEADAQPLQA ASGPPTAVAI ASINHASANG GSSRTITSAT PIPTAILAAP  60
PPHTLTLALP IQQQPHTRSG REDCWSEGAT ATLIDAWGER YIELNRGNLK QKHWKDVAAA  120
VSCREDCTKT PKTDVQCKNR LDTLKKKYKI EKAKILNGAT SSKWPFFHRL DQLIGPSKKH  180
SAIANAAAIT NAPSLNTGPM TMGPEVEIQQ HGSSDGSTDS YPPEITGRKR KAPEGMFHKT  240
PEGGAAALRE LTRAIVKFGE VYERVEGLKL QQMVEMERQR MGLVKDLELQ RMHLFAKAQV  300
ELEQMKRGGR HSRGTTNGMG NHHHSNNNNN TG*
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006843852.10.0trihelix transcription factor ASIL2
SwissprotQ9LJG87e-48ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLW1P6L60.0W1P6L6_AMBTC; Uncharacterized protein
STRINGERN055270.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP4871684
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11100.15e-55sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]