PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00007.2
Common NameAMTR_s00007p00020440
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family Trihelix
Protein Properties Length: 314aa    MW: 35298.2 Da    PI: 10.0373
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00007.2genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix44.34.8e-1448138186
                                trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkike 66 
                                             +W++  +l+L+ea  e+  +l+rg+lk+++W+ev++++      +    ++ +qCk++++ l+k++k +k+
  evm_27.model.AmTr_v1.0_scaffold00007.2  48 CWSEGATLTLVEAWGERYLHLNRGNLKQKHWKEVAEAVnsrhsTSSRSFKTDIQCKNRIDTLKKKFKLEKA 118
                                             7*************************************875553333445789****************** PP

                                trihelix  67 gekkrtsessstcpyfdqle 86 
                                               +  +   + ++p++ +l+
  evm_27.model.AmTr_v1.0_scaffold00007.2 119 KIIASNGAYTPKWPFYARLD 138
                                             *9999999999******997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.5E-2346138No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MDEPDATPIA SHPPATTQSR ALSLALTSTK QQDGTITTTP TSNGREDCWS EGATLTLVEA  60
WGERYLHLNR GNLKQKHWKE VAEAVNSRHS TSSRSFKTDI QCKNRIDTLK KKFKLEKAKI  120
IASNGAYTPK WPFYARLDYL IGPSKKSQKL VSRVTRAPVT FTVKPVKEKP PLVADAINGS  180
PLGRGIASSG DSRDSTESCP GRSNGFSEPR AAFRELARAI ARFGEIYERV ETSKQQQLVD  240
LEKQRMEFTK ELEYQRMQMF VDAQLELKKM KRAKHGGSGE MLVSLGFCAS FFLFSFSFFV  300
YGIFFGFMFF DDW*
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006843516.20.0trihelix transcription factor ASIL2 isoform X2
RefseqXP_020522478.10.0trihelix transcription factor ASIL2 isoform X1
SwissprotQ9LJG83e-37ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLW1PC730.0W1PC73_AMBTC; Uncharacterized protein
STRINGERN051910.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP4871684
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05550.13e-54sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]