PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm_27.model.AmTr_v1.0_scaffold00007.133

Common Name

AMTR_s00007p00169630

Organism

Amborella trichopoda

Taxonomic ID

13333

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

MYB

Protein Properties

Length: 269aa MW: 28689.4 Da PI: 9.6928

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00007.133	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.6	2.6e-17	9	54	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd l ++v+ +G ++W++I++ ++ gR++k+c++rw + evm_27.model.AmTr_v1.0_scaffold00007.133 9 KGSWSPEEDATLSRLVAHHGARNWSAISAGIP-GRSGKSCRLRWCNQ 54 799***************************.*********985 PP
2	Myb_DNA-binding	55	1.9e-17	63	105	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++++ Ed +v+a++++G++ W+tIar ++ gRt++ +k++w++ evm_27.model.AmTr_v1.0_scaffold00007.133 63 PFSPAEDAAIVEAHARHGNK-WATIARLLP-GRTDNAIKNHWNST 105 79****************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	19.575	4	55	IPR017930	Myb domain
SuperFamily	SSF46689	1.8E-29	6	102	IPR009057	Homeodomain-like
SMART	SM00717	1.4E-14	8	57	IPR001005	SANT/Myb domain
Pfam	PF00249	1.5E-17	9	54	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.2E-23	10	61	IPR009057	Homeodomain-like
CDD	cd00167	1.96E-14	11	53	No hit	No description
PROSITE profile	PS51294	25.674	56	110	IPR017930	Myb domain
SMART	SM00717	1.1E-14	60	108	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.6E-23	62	109	IPR009057	Homeodomain-like
CDD	cd00167	2.34E-12	63	106	No hit	No description
Pfam	PF00249	9.9E-15	63	105	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence Send to blast
MTMTMTRVKG SWSPEEDATL SRLVAHHGAR NWSAISAGIP GRSGKSCRLR WCNQLSPNVH 60 HRPFSPAEDA AIVEAHARHG NKWATIARLL PGRTDNAIKN HWNSTLRRSA VNAQTHNIHT 120 QPHSNHTQPC SLPPPHSPAP YVRHAQAVRG DSSGGSECGS EGRSRSEDEE PPTCLTLLPP 180 GSEAKGVGPQ GGYVRVEEAS AMVGAAVKVA MAEALPMVMV PRGHGGDSGN GAFIGRDGRL 240 MALIHGMIAE EVRSYLGGML PISQQRKV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	1e-34	8	110	3	105	MYB PROTO-ONCOGENE PROTEIN
1h88_C	5e-34	8	110	57	159	MYB PROTO-ONCOGENE PROTEIN
1h89_C	5e-34	8	110	57	159	MYB PROTO-ONCOGENE PROTEIN
1mse_C	1e-34	8	110	3	105	C-Myb DNA-Binding Domain
1msf_C	1e-34	8	110	3	105	C-Myb DNA-Binding Domain
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006843647.3	0.0	transcription factor MYB44
TrEMBL	W1P634	0.0	W1P634_AMBTC; Uncharacterized protein
STRING	ERN05322	0.0	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	7e-54	myb domain protein 73

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00007.133

Publications ? help Back to Top
Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323]