PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00006.294
Common NameAMTR_s00006p00266920, LOC18434083
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family ERF
Protein Properties Length: 309aa    MW: 34098.4 Da    PI: 9.7903
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00006.294genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.51.2e-16108156355
                                       AP2   3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                               + GVr+++ +grWvAeI+d      ++ r +lg+f+ aeeAaka++aa++ l+g
  evm_27.model.AmTr_v1.0_scaffold00006.294 108 FLGVRQRP-SGRWVAEIKDaS----QKLRLWLGTFDRAEEAAKAYDAAARILRG 156
                                               56******.7*********44....46***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103219.73107164IPR001471AP2/ERF domain
CDDcd000183.89E-15107166No hitNo description
SMARTSM003802.7E-30107170IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.4E-27108164IPR001471AP2/ERF domain
PRINTSPR003677.3E-7108119IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-18108165IPR016177DNA-binding domain
PfamPF008472.7E-10110155IPR001471AP2/ERF domain
PRINTSPR003677.3E-7130146IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MALLSSSKSH NPSFNGGKTH QIAIEKDPLF PPNMAQDIHS ETSPSFHGGA QSHQLARGKE  60
PISSSSATQE SSPPESHDPN FNGGLKPHRI APEKELLPQK QGSKTMRFLG VRQRPSGRWV  120
AEIKDASQKL RLWLGTFDRA EEAAKAYDAA ARILRGKNAK TNFQTDEFSR SSCLKNPKFQ  180
HLLLKAMAKR RYADQVRKNS SYLCNENLRF LEGETSLIES GEPTRTGEMM HGEGLSCYLG  240
RGNLVYGDGR VWSGGGEDFS RVLYGSKVYS TVHVAPSFNV SLHLESVVRK DKTNPLLVEN  300
GWLDAVSM*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006844221.10.0ethylene-responsive transcription factor 1B
TrEMBLW1PE400.0W1PE40_AMBTC; Uncharacterized protein
STRINGERN058960.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.15e-19related to AP2 11
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]