PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00006.275
Common NameAMTR_s00006p00265300, LOC18434064
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family Trihelix
Protein Properties Length: 494aa    MW: 53529.4 Da    PI: 8.0629
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00006.275genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix54.33.5e-17101187186
                                  trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkik 65 
                                               +W++  +  L+ea++e+  +l+rg+l++ +W+ev+ ++      +g ++s +qCk+k +nl+kryk+++
  evm_27.model.AmTr_v1.0_scaffold00006.275 101 EWSDCAINSLLEAYTEKYVELNRGNLRGRDWDEVAMAVsarkGGKGGTKSVEQCKNKVDNLKKRYKAER 169
                                               5*************************************8876667889********************* PP

                                  trihelix  66 egekkrtsessstcpyfdqle 86 
                                               +++++      s++p+f+++e
  evm_27.model.AmTr_v1.0_scaffold00006.275 170 QRMGGS---GMSHWPWFKKME 187
                                               ****83...4559*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.3E-2399189No hitNo description
Gene3DG3DSA:3.40.1160.106.0E-72249486IPR001048Aspartate/glutamate/uridylate kinase
SuperFamilySSF536332.49E-57253486IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B35.648253487IPR015963Uridylate kinase, bacteria
CDDcd042542.41E-124256487No hitNo description
TIGRFAMsTIGR020753.3E-75256486IPR015963Uridylate kinase, bacteria
PfamPF006961.4E-20257466IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0046939Biological Processnucleotide phosphorylation
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MACDDDDDDF PLLHEKTPSS SNPTPQTLDF AGKCPPFCFP DDPLTFSGDR KTLIRPEKRK  60
EAEDSGDSSF AKKHHHHHHS GPKILSVSSS SCSEIKKDRE EWSDCAINSL LEAYTEKYVE  120
LNRGNLRGRD WDEVAMAVSA RKGGKGGTKS VEQCKNKVDN LKKRYKAERQ RMGGSGMSHW  180
PWFKKMEEIV GGGGGGVKSG GEGEEAVERE RVVSSGVVSV VGNSGRQAKR YTVVSPNTSG  240
LPNTLKTKSL SNPRWRRVVF KISGAALAGN GSQNVDPKVT SLIAREVVAV NRLGVEVAIV  300
VGGRNFFCGE SWTAATGLDR TAADQIGMMA TVMNSILLQA SIENLGTQTR LQTAFKMAEV  360
AEPYIRRRAI RHLEKGRVVI FGAGTGNPYF TTDTAAALRA SEINAEAVLK GTNADGLYDC  420
DSRNSSNVGF EHMSYRDMIS RGLSASMDIT AIHLCEENCI PVVIFNLLEP GNISRALCGD  480
PVGILIDQSA RIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ek5_A3e-692474861239Uridylate kinase
3ek5_B3e-692474861239Uridylate kinase
3ek5_C3e-692474861239Uridylate kinase
3ek5_D3e-692474861239Uridylate kinase
3ek5_E3e-692474861239Uridylate kinase
3ek5_F3e-692474861239Uridylate kinase
3ek6_A3e-692474861239Uridylate kinase
3ek6_B3e-692474861239Uridylate kinase
3ek6_C3e-692474861239Uridylate kinase
3ek6_D3e-692474861239Uridylate kinase
3ek6_E3e-692474861239Uridylate kinase
3ek6_F3e-692474861239Uridylate kinase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006844202.10.0uncharacterized protein LOC18434064 isoform X2
TrEMBLW1P7M40.0W1P7M4_AMBTC; Uncharacterized protein
STRINGERN058770.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP61611218
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.11e-158Trihelix family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]