PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00006.141 | ||||||||
Common Name | AMTR_s00006p00248860, LOC18433928 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | Dof | ||||||||
Protein Properties | Length: 263aa MW: 27846.9 Da PI: 8.1455 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 123.8 | 5.7e-39 | 36 | 97 | 2 | 63 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 ++++lkcprCdstntkfCyynny+l qPr+fCk+CrryWtkGG lrnvPvGgg+rknk+sss evm_27.model.AmTr_v1.0_scaffold00006.141 36 PTQSLKCPRCDSTNTKFCYYNNYNLCQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKNKRSSS 97 57899*****************************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-25 | 34 | 92 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 4.3E-32 | 38 | 94 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.59 | 40 | 94 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 42 | 78 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence Send to blast |
MQDPGTDPLV PAQLRASAAA SCSRLLTHNR RLRPHPTQSL KCPRCDSTNT KFCYYNNYNL 60 CQPRHFCKSC RRYWTKGGVL RNVPVGGGCR KNKRSSSSSQ AAKPSRQPAP PPTAASAALS 120 SSSESSSITG TEPTIGSAQT AGQAGAEQYF NFPAAAPTEI LDTSAEMMNF GGFLPESGSF 180 TSLITGGPSS ANPGMGFGMT ELGFRLQGQP EIGGGNGDLT SRMTAFDWQG NGELDVGNGV 240 EQGFCWGQGQ WGDHDQQGFF FP* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00570 | DAP | Transfer from AT5G60850 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004791 | 1e-35 | AP004791.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0491D10. | |||
GenBank | AP014962 | 1e-35 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011623232.1 | 0.0 | dof zinc finger protein DOF1.7 | ||||
Refseq | XP_011623233.1 | 0.0 | dof zinc finger protein DOF1.7 | ||||
Refseq | XP_020522740.1 | 0.0 | dof zinc finger protein DOF1.7 | ||||
Refseq | XP_020522741.1 | 0.0 | dof zinc finger protein DOF1.7 | ||||
TrEMBL | W1PCS4 | 0.0 | W1PCS4_AMBTC; Uncharacterized protein | ||||
STRING | ERN05743 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP38 | 17 | 445 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60850.1 | 5e-34 | OBF binding protein 4 |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00006.141 |
Entrez Gene | 18433928 |
Publications ? help Back to Top | |||
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