PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00004.51
Common NameAMTR_s00004p00067720
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family WRKY
Protein Properties Length: 105aa    MW: 12064.5 Da    PI: 9.8404
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00004.51genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY76.62.9e-24865259
                                             --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                                     WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
                                             +Dg+ WrKYGqK +++ +  rsY++C  ++C ++k+ve +++dp+ + ++Y g+H h+
  evm_27.model.AmTr_v1.0_scaffold00004.51  8 EDGFVWRKYGQKFIRNIRKNRSYFKCQKKSCGARKRVEWCNSDPQNLRVIYDGSHSHP 65
                                             7********************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081121.448267IPR003657WRKY domain
SuperFamilySSF1182904.45E-23467IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.9E-25567IPR003657WRKY domain
SMARTSM007741.0E-23766IPR003657WRKY domain
PfamPF031063.0E-22865IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 105 aa     Download sequence    Send to blast
MDRVCMPEDG FVWRKYGQKF IRNIRKNRSY FKCQKKSCGA RKRVEWCNSD PQNLRVIYDG  60
SHSHPPPISS KTSDDDHQNP SSSIANQYNL LTQVLRGLND TTTT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-144671477Probable WRKY transcription factor 4
2lex_A4e-144671477Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006488951.13e-35probable WRKY transcription factor 23
RefseqXP_024047358.13e-35probable WRKY transcription factor 23
TrEMBLW1NEF15e-73W1NEF1_AMBTC; Uncharacterized protein
STRINGERM935358e-74(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49520.16e-17WRKY DNA-binding protein 48
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]