PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00004.302 | ||||||||
Common Name | AMTR_s00004p00270830, LOC18421502 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | NF-YC | ||||||||
Protein Properties | Length: 281aa MW: 30384.4 Da PI: 6.301 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 180 | 2.2e-56 | 87 | 191 | 1 | 102 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlha 66 ql++fw++q ie++tdfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+ evm_27.model.AmTr_v1.0_scaffold00004.302 87 QLQAFWANQiqeIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHT 155 89******98889******************************************************** PP NF-YC 67 eenkrrtlkksdiaaavtrtdifdflvdivprdelk 102 eenkrrtl+k+diaaa+trtdifdflvdivprdelk evm_27.model.AmTr_v1.0_scaffold00004.302 156 EENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDELK 191 *********************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 5.87E-34 | 77 | 181 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.5E-21 | 109 | 172 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 1.3E-37 | 110 | 187 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 281 aa Download sequence Send to blast |
MDQSGQQQQH QPQQPVMGVV SGAAQIAYAA PPYQPANMVG APGAAPSPVG AAGQPPSFPT 60 SPAQLMAQHQ LACQHLQHHH QQQQAQQLQA FWANQIQEIE QTTDFKNHSL PLARIKKIMK 120 ADEDVRMISA EAPVIFAKAC EMFILELTLR SWIHTEENKR RTLQKNDIAA AITRTDIFDF 180 LVDIVPRDEL KEEGGLGVGR AGLPGGPSDA MAPYYYVSPQ QVPQVGGAPG MIVGKPVVDQ 240 AVAAALYGPR PPVAYVPWQQ PQAPQQTQGQ TQQQQMPDSG * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 2e-60 | 95 | 187 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 159 | 165 | RRTLQKN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269|PubMed:26542958}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases in the middle of daytime, peaks around the end of the light period and gradually decreases during the dark period and beginning of daylight. {ECO:0000269|PubMed:26542958}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020532226.1 | 0.0 | nuclear transcription factor Y subunit C-2 isoform X1 | ||||
Refseq | XP_020532230.1 | 0.0 | nuclear transcription factor Y subunit C-2 isoform X2 | ||||
Swissprot | Q655V5 | 1e-83 | NFYC4_ORYSJ; Nuclear transcription factor Y subunit C-4 | ||||
TrEMBL | W1NEF6 | 0.0 | W1NEF6_AMBTC; Uncharacterized protein | ||||
STRING | ERM93786 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP315 | 17 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56170.2 | 1e-68 | nuclear factor Y, subunit C2 |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00004.302 |
Entrez Gene | 18421502 |
Publications ? help Back to Top | |||
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