PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00003.380
Common NameAMTR_s00003p00266720, LOC18431599
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family B3
Protein Properties Length: 974aa    MW: 106487 Da    PI: 7.3704
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00003.380genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.51.2e-18388487198
                                               EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTH CS
                                        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGW 65 
                                               f+k l+ sd+++ grlvlpkk+ae++  +++++e+  l+++d +g++W +++++  +++s++yvl+ G 
  evm_27.model.AmTr_v1.0_scaffold00003.380 388 FEKMLSASDAGRIGRLVLPKKCAEAYfpSISQPEGLPLRIQDARGKEWVFQFRFwpNNNSRMYVLE-GV 455
                                               89**************************666677788***************9989999999***9.** PP

                                               HHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                                        B3  66 keFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                                                   ++ +L++gD+v+F++++  e++lv+++++
  evm_27.model.AmTr_v1.0_scaffold00003.380 456 TPCIQSMQLQAGDTVTFSRMD-PEGKLVMGFRK 487
                                               ******************876.77777777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.4E-30385492IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-19385488IPR015300DNA-binding pseudobarrel domain
CDDcd100174.96E-21386487No hitNo description
PfamPF023624.6E-16388487IPR003340B3 DNA binding domain
SMARTSM010191.3E-19388488IPR003340B3 DNA binding domain
PROSITE profilePS5086311.378388489IPR003340B3 DNA binding domain
PROSITE profilePS5105014.265650700IPR011124Zinc finger, CW-type
PfamPF074965.8E-12655697IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 974 aa     Download sequence    Send to blast
MSKICFNKDC GVADTERWRK GWRLRSGELS DLCDRCGSAY EESRFCEGFH LDVAGWRTCE  60
TCGKRIHCGC VASVHTYILL DTGGIECMLC ARKSILFAAP NQIWPSPMFL PLPPSDRLVD  120
RPVNAWSQIA ASNSCSGQVK QVPPLGYSAT NPSEFQCMQY LDGGIFHNID KSFPCNQSTI  180
PIFEKKRIIE DSLERKPSHH LKNEALGEPV VGHTSIEPIS GLNTFHSEEE KPEGKPDCSR  240
IAGGRSSVDA RKSVSETDLG NILGRNLDVS SSCISVSRQS LNAKDDISLP LLGLGVSVSS  300
PAETMDATKV SGCETRERSL QLFPRQYLPG SCSGFQSSGD LRSPMRIARP RGEGRGKNQL  360
LPRYYPRITD QEIQQITGDS NSVITPLFEK MLSASDAGRI GRLVLPKKCA EAYFPSISQP  420
EGLPLRIQDA RGKEWVFQFR FWPNNNSRMY VLEGVTPCIQ SMQLQAGDTV TFSRMDPEGK  480
LVMGFRKAAS APSEQDAQVH KQGNGISTIG ETNHGSGAAG EATSALPFRS SKGATESTNY  540
SSNSQFHSLD PALPLSRDKE ACMSKEGSNS KSLFLSDKRK SSTLGSKSKR LRIDNEDSIE  600
LKLTWEEAQD LLRPPPNHPP NVVIIEGHEI EEYKEPPVIG KSTIFATNKA GEKYQWVQCD  660
NCAKWRKLPM DVLVPPRWTC ADNSWDPKRS SCSSAQELST EQTEHLLQTH AALKRIDQTT  720
AEGSSAGLDA LADAAILRGD DPEEPTSTTA SPPTTRHPRH RPGCSCIVCI QPPSGKGPKH  780
KPNCTCNVCM TVKRRFRTLM MRRKKRQEAE IEASRKALIS QMENVKSSDD SGERKMENSK  840
SDEDSGGRKE NVKSGDDDSG GKIQEDLKPV EEFGGSKRSE NWRSSKEKAS SSLQGANPEY  900
SRRGSGTLKG RIDLNCQPER EDELGHFPEG GVGLEVEANG VGPGGYEVET GRGALGTSRR  960
EADVASGSGS GSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yzy_C2e-653664911126B3 domain-containing transcription repressor VAL1
5yzz_C2e-653664911126B3 domain-containing transcription repressor VAL1
5z00_C2e-653664911126B3 domain-containing transcription repressor VAL1
5z00_G2e-653664911126B3 domain-containing transcription repressor VAL1
5z00_K2e-653664911126B3 domain-containing transcription repressor VAL1
5z00_M2e-653664911126B3 domain-containing transcription repressor VAL1
6j9a_A2e-653664952131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1792804KRRFRTLMMRRKK
2792805KRRFRTLMMRRKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006841783.10.0B3 domain-containing transcription repressor VAL2 isoform X1
TrEMBLW1P6B20.0W1P6B2_AMBTC; Uncharacterized protein
STRINGERN034580.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP12361446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-149HSI2-like 1
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]