PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00003.302 | ||||||||
Common Name | AMTR_s00003p00252470, LOC18431520 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | NAC | ||||||||
Protein Properties | Length: 350aa MW: 38674.3 Da PI: 9.3455 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 173.7 | 5.4e-54 | 15 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkya 69 lppGfrFhPtdeelvv+yLkkk+++ +l++ ++i+evd+yk++Pw+Lp k++ +e+ewyfFs+rd+ky+ evm_27.model.AmTr_v1.0_scaffold00003.302 15 LPPGFRFHPTDEELVVHYLKKKASSAPLPV-TIIAEVDLYKFDPWELPGKATFGEQEWYFFSPRDRKYP 82 79****************************.89***************8888999************** PP NAM 70 tgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +g r+nra++sgyWkatg+dk++l++ ++++vg+kk Lvfy gr pkg kt+W+mheyrl evm_27.model.AmTr_v1.0_scaffold00003.302 83 NGARPNRAATSGYWKATGTDKPILTSgGTQKVGVKKALVFYGGRPPKGIKTNWIMHEYRL 142 ************************9977788***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.97E-65 | 9 | 176 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 62.159 | 15 | 176 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.9E-28 | 16 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0045995 | Biological Process | regulation of embryonic development | ||||
GO:0048317 | Biological Process | seed morphogenesis | ||||
GO:0080060 | Biological Process | integument development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 350 aa Download sequence Send to blast |
MESTDSSSNS QQPQLPPGFR FHPTDEELVV HYLKKKASSA PLPVTIIAEV DLYKFDPWEL 60 PGKATFGEQE WYFFSPRDRK YPNGARPNRA ATSGYWKATG TDKPILTSGG TQKVGVKKAL 120 VFYGGRPPKG IKTNWIMHEY RLTDGGNTKP NNDLSNNNKK SSLRLDDWVL CRIYKKNNQS 180 PRLMERERED SMDDMLAPLP SMDGQPHKLP AQKPSTFGAL LENENFFDGL LTDDGVSNNM 240 NSMPQLPSSH QQNSTKSGGD LPLAPAALPF KRTLPSPYWN EAAMPLAKRF QSNQSTSGSN 300 DGSNSIATLL NQLPGAAAPF HHQGLLSSIG DGVFRPQYQQ FSGINWNSS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-74 | 12 | 182 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-74 | 12 | 182 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-74 | 12 | 182 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-74 | 12 | 182 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 5e-74 | 12 | 182 | 14 | 171 | NAC domain-containing protein 19 |
4dul_B | 5e-74 | 12 | 182 | 14 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. Sequences of 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype. {ECO:0000269|PubMed:17124321}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00361 | DAP | Transfer from AT3G15510 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006841705.1 | 0.0 | NAC transcription factor 56 | ||||
Swissprot | A0SPJ9 | 1e-105 | NAM2_HORVV; NAC transcription factor NAM-2 | ||||
TrEMBL | W1P8R5 | 0.0 | W1P8R5_AMBTC; Uncharacterized protein | ||||
STRING | ERN03380 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15510.1 | 1e-98 | NAC domain containing protein 2 |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00003.302 |
Entrez Gene | 18431520 |
Publications ? help Back to Top | |||
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