PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00003.139 | ||||||||
Common Name | AMTR_s00003p00165930, LOC18431354 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | ERF | ||||||||
Protein Properties | Length: 205aa MW: 20954 Da PI: 4.912 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.8 | 3.2e-19 | 13 | 62 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y GVr+++ +grWvAeI+d ++ r +lg++++ae+Aa+a+++a+ +l+g evm_27.model.AmTr_v1.0_scaffold00003.139 13 KYVGVRQRP-SGRWVAEIKD----SaHKVRLWLGTYDSAEDAARAYDEAAFSLRG 62 8********.7*********....3345*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 4.0E-28 | 13 | 70 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.2E-35 | 13 | 76 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.57E-29 | 13 | 69 | No hit | No description |
PROSITE profile | PS51032 | 20.679 | 13 | 70 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.7E-14 | 13 | 62 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.04E-20 | 13 | 70 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.2E-7 | 14 | 25 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-7 | 36 | 52 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MRMCRKPAKG REKYVGVRQR PSGRWVAEIK DSAHKVRLWL GTYDSAEDAA RAYDEAAFSL 60 RGPGARTNFG NPTSTSNQVS ANEDPTPFSF EGPEESTCVV GGLRGALQAK LMEGRGLSRG 120 TVVGPASSAI NSVSEKGSGD KSEMWNTCLG GGGGGGGGGG GGGEGPGESG GGGDGNFEFV 180 GGLEEGENGS WAWDLLLPSM FSPS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-16 | 13 | 69 | 14 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006841542.1 | 1e-144 | ethylene-responsive transcription factor CRF1 | ||||
TrEMBL | W1P069 | 1e-142 | W1P069_AMBTC; Uncharacterized protein | ||||
STRING | ERN03217 | 1e-143 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 3e-16 | related to AP2 11 |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00003.139 |
Entrez Gene | 18431354 |
Publications ? help Back to Top | |||
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