PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00003.101
Common NameAMTR_s00003p00133970, LOC18431316
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family ERF
Protein Properties Length: 270aa    MW: 30632.1 Da    PI: 5.2069
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00003.101genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP269.65.5e-2283133155
                                       AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                               s y+G+r+++ +g+W+AeIrdp++     r++lg++gtaeeAa+a+++a+++++g
  evm_27.model.AmTr_v1.0_scaffold00003.101  83 SVYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTYGTAEEAARAYDEAAREIRG 133
                                               78********.**********954...4************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.4E-1583133IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-2283142IPR016177DNA-binding domain
CDDcd000184.92E-3183143No hitNo description
Gene3DG3DSA:3.30.730.101.1E-3284142IPR001471AP2/ERF domain
SMARTSM003802.8E-3784147IPR001471AP2/ERF domain
PROSITE profilePS5103223.97384141IPR001471AP2/ERF domain
PRINTSPR003672.5E-118596IPR001471AP2/ERF domain
PRINTSPR003672.5E-11107123IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008219Biological Processcell death
GO:0009723Biological Processresponse to ethylene
GO:0009735Biological Processresponse to cytokinin
GO:0009753Biological Processresponse to jasmonic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051707Biological Processresponse to other organism
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MCGGAIISDF IPVKRGRNLT RQDFWSQLGP YFDFPTSPDS DSTSGQKQGF PVTRKEIRKK  60
PRVQANKYKS SSTPGANSKE RKSVYRGIRQ RPWGKWAAEI RDPRKGVRVW LGTYGTAEEA  120
ARAYDEAARE IRGDKAKVNF PDVQNPPEKK QKTGMKNIET MGSLTYSVAE KIWPENLSAT  180
GNGDFPAYGG MKEEEEEEGL SWSVASLERL LALECGVGEE RERSENEVWW EERERSGNGI  240
WREERERSEN EVLDDLFFLD DFPVPPPLC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-20851451576Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00109PBMTransfer from AT3G16770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006841504.10.0ethylene-responsive transcription factor RAP2-3
TrEMBLW1P6B00.0W1P6B0_AMBTC; Uncharacterized protein
STRINGERN031790.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.12e-34ethylene-responsive element binding protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]