PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00002.92
Common NameAMTR_s00002p00132230, LOC18429091
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family STAT
Protein Properties Length: 719aa    MW: 79978.6 Da    PI: 6.013
Description STAT family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00002.92genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1STAT185.85.3e-582263481122
                                     STAT   1 ldvvllnalgqpvekdvevvasLlyadsglvveks.ddaeapLLisydGvefssedrplkllrGrasfkl 69 
                                              ldv+ll+alg++v+kd+e+ a L+yad+g++ve+s +d eapLL+++dGvef+s drp+kll+Grasfkl
  evm_27.model.AmTr_v1.0_scaffold00002.92 226 LDVILLDALGRSVHKDMELCALLVYADNGMLVERSkGDPEAPLLTTFDGVEFPSADRPIKLLHGRASFKL 295
                                              8*********************************999********************************* PP

                                     STAT  70 kisqLsskcdnrLfrikfeipklkkypfleavskpirCisrsrntrsssltkk 122
                                              kisqLsskcdnrLfr++f +++  +ypfle+ s+pirCisr+r+ r ss++kk
  evm_27.model.AmTr_v1.0_scaffold00002.92 296 KISQLSSKCDNRLFRVRFVSLSTPRYPFLEVHSRPIRCISRNRTIRLSSVSKK 348
                                              **********************************************9998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF498995.63E-612142IPR013320Concanavalin A-like lectin/glucanase domain
Gene3DG3DSA:3.30.505.108.0E-4612685IPR000980SH2 domain
SuperFamilySSF555509.49E-7614695IPR000980SH2 domain
PROSITE profilePS5000110.123618718IPR000980SH2 domain
Sequence ? help Back to Top
Protein Sequence    Length: 719 aa     Download sequence    Send to blast
MPCEQALVEE DDEYVTLDKI LINLQNPSSF TLCLWVYFLP PAPLSSIVIR QIHPDIEFDV  60
PFLVLNSEKK LSLLPMLFLH NEALNPEATS WDDRPCASAE VACPLEKWVH IGCEVSRDAI  120
RLHIDGVMVG EKFLSCSMEN NIDQNKLSGI TLSGINGGDN KLQGYAHYVK VIAAPSVTNH  180
FVKNPPVELA LDGSSCMSEN HEVEESRDGV WSVVGGKASC RRNFALDVIL LDALGRSVHK  240
DMELCALLVY ADNGMLVERS KGDPEAPLLT TFDGVEFPSA DRPIKLLHGR ASFKLKISQL  300
SSKCDNRLFR VRFVSLSTPR YPFLEVHSRP IRCISRNRTI RLSSVSKKHN PKAMNQLDTA  360
QSPGGNDDLL EPDQNLGSKL SPPLKRVKSG HKLSIKYGTD FASDNSCDGN RSHTLTTTDD  420
GNVLRGNFEE KTRNHYGDTG DIESDSESDD DRNHGLRSAD SGSPLSDMAV FRYCLEGMAE  480
RRAYLKEAIS SMSDRNLADF AAHVSENTGC YHNGYQILIA KRLIQEGTQT WNLLSGNNHH  540
VLWINAIPEI ERQFMKISQS TSRSLSGLDK EFLRRIAGGC DILVHENFEK LWQWLYPVAL  600
AISKQPVKAA WESTSPKWIE GLITQEEAEA FIRGPHGLQK MGTFILRFPT SRNWPHPDAG  660
SLVVSYVGAD NALHHKLLSL DDRGTNGKSL PELLLAEPEL SQLCRVGRNL AETVEDEI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006838447.10.0uncharacterized protein LOC18429091 isoform X2
TrEMBLW1P0D10.0W1P0D1_AMBTC; Uncharacterized protein
STRINGERN010160.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP59411618
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78540.11e-169SH2 domain protein B
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]