PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00002.163
Common NameAMTR_s00002p00186590
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family ARR-B
Protein Properties Length: 543aa    MW: 59719.8 Da    PI: 6.6709
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00002.163genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like60.14.5e-19227282155
                                   G2-like   1 kprlrWtpeLHerFveaveqLGG.sekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                               kpr++Wt+eLH+ F++a+++L   +e+ +P +i elm+v+gL    ++SHLQkYR 
  evm_27.model.AmTr_v1.0_scaffold00002.163 227 KPRIVWTSELHQIFLDAINKLAHnHEEVIPTKIEELMNVPGLCKGSIASHLQKYRK 282
                                               79*******************75256789**************************6 PP
2Response_reg73.49.1e-25211291109
                                               EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHH CS
                              Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeire 67 
                                               vl+vdD+++ +++++++l++ +y ev ++++++ al+++++ +  +D++l+ + +p+mdGlell + r 
  evm_27.model.AmTr_v1.0_scaffold00002.163  21 VLVVDDDHACLKVMEELLQSCKY-EVVTCSEATGALNKIRDGNgrFDVVLCNVHLPDMDGLELLNQVRM 88 
                                               89*********************.***************988888**********************99 PP

                                               HTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
                              Response_reg  68 eepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                                               e  +lp i+++  +e++ + + ++ Ga dfl Kp+ + +l +
  evm_27.model.AmTr_v1.0_scaffold00002.163  89 EM-DLPFIMISVDSEKDIVMKGIENGACDFLIKPVRKGQLKT 129
                                               76.*********************************999976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521723.98E-3317142IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23002.6E-3718148No hitNo description
SMARTSM004488.2E-2619131IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011039.95220135IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.3E-2221129IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.50E-2222135No hitNo description
SuperFamilySSF466891.18E-12224285IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-18225285IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-17227282IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MAKTLIEELG YPSSFPEGLR VLVVDDDHAC LKVMEELLQS CKYEVVTCSE ATGALNKIRD  60
GNGRFDVVLC NVHLPDMDGL ELLNQVRMEM DLPFIMISVD SEKDIVMKGI ENGACDFLIK  120
PVRKGQLKTI WQHVIRNKIT KKNNGSKEVV KIMSTEDCGG HHGLLNGLEN VHSRNVEDSL  180
GHHEASNGLL HATSLNKGND KKGNKRKDKG KEENDSRCTS ASCTPKKPRI VWTSELHQIF  240
LDAINKLAHN HEEVIPTKIE ELMNVPGLCK GSIASHLQKY RKNLRTEIKD EAPQGDSAPI  300
YVGNLPKERH GSVIAETPDL DAQVFASQMN PMASERRVVN RKGHTNTSTN MVSRLPASLG  360
VSMGKEQLMT GSLISPSMAP VHTISNFLNM ASLEPCDIQS MLPYYKAGGF LQSCNTVRRY  420
HLGNARDNDI ALRSSHSGFG YFDKHSQFHM QNLKIQDISP DMRACTSGAQ SCSMGTGENS  480
PLKNLGQVTT EMVSTNELVQ ENDLKVLYMA PFQNNIVFEG SSEAASVDML DAALNNEGGS  540
NS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020519848.10.0uncharacterized protein LOC18429163 isoform X1
TrEMBLW1NTZ90.0W1NTZ9_AMBTC; Uncharacterized protein
STRINGERN010870.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP29217120
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-57response regulator 2
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]