PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00002.137
Common NameAMTR_s00002p00164190, LOC18429137
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family Trihelix
Protein Properties Length: 280aa    MW: 31987.7 Da    PI: 10.1051
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00002.137genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix66.45.8e-2134117286
                                  trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergf...erspkqCkekwenlnkrykkike 66 
                                               Wt++e+laLi++++e++ +l+rg+lk+ +W+ev++ +  + g+   +++++qC++k e+l+kry+ +++
  evm_27.model.AmTr_v1.0_scaffold00002.137  34 WTHEETLALIDVYQEKWFSLKRGQLKASHWDEVAELVcLRCGYsspSKTATQCRHKVEKLRKRYRTERQ 102
                                               ***********************************7667777755579********************* PP

                                  trihelix  67 gekkrtsessstcpyfdqle 86 
                                                + +      s++pyf+++e
  evm_27.model.AmTr_v1.0_scaffold00002.137 103 KNPDY-----SSWPYFRKME 117
                                               *9984.....67******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510298.71922124IPR006578MADF domain
Gene3DG3DSA:1.10.10.601.4E-42697IPR009057Homeodomain-like
PROSITE profilePS500907.7822694IPR017877Myb-like domain
SMARTSM007170.0023096IPR001005SANT/Myb domain
PfamPF138371.8E-2133118No hitNo description
SMARTSM005951.2E-941124IPR006578MADF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MALAAPTSSS SLPEGDAEPE PSLSPRPRKP PGPWTHEETL ALIDVYQEKW FSLKRGQLKA  60
SHWDEVAELV CLRCGYSSPS KTATQCRHKV EKLRKRYRTE RQKNPDYSSW PYFRKMEFME  120
SPGLPKKNPN PRASPSPSPN SSIPNGIPLQ KVRFVSDTGP RPLTFNAVKL NREDAERSYL  180
PSPPPHPRSQ RSCPSSRAGV KHARDPISEL TSVVKCIGEG FMKLEHMKME MMRDMERMRM  240
EMEMKRMEMV LESQQHVAEL FARALYSTKK FRRDPSSES*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006838492.10.0trihelix transcription factor ASIL1
TrEMBLW1P0H60.0W1P0H6_AMBTC; Uncharacterized protein
STRINGERN010610.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP40591122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.19e-30Trihelix family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]