PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00001.72 | ||||||||
Common Name | AMTR_s00001p00105570 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | MYB | ||||||||
Protein Properties | Length: 344aa MW: 39146.9 Da PI: 5.6359 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.3 | 2.6e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+lv++++ G g+W+ ++++ g+ R++k+c++rw +yl evm_27.model.AmTr_v1.0_scaffold00001.72 14 RGLWSPEEDEKLVRYITSNGYGCWSEVPEKAGLQRCGKSCRLRWINYL 61 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 54.7 | 2.4e-17 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr+T eE+++++++++ G++ W+ Ia++++ gRt++++k++w+++ evm_27.model.AmTr_v1.0_scaffold00001.72 67 RGRFTSEEEKIIINLHAVVGNR-WAHIASHLP-GRTDNEIKNYWNSW 111 89********************.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 9.6E-24 | 6 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.852 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.7E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.7E-11 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.8E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.04E-9 | 17 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.42 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.2E-25 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-15 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.89E-11 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:1901430 | Biological Process | positive regulation of syringal lignin biosynthetic process | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 344 aa Download sequence Send to blast |
MGHHSCCNQQ KVKRGLWSPE EDEKLVRYIT SNGYGCWSEV PEKAGLQRCG KSCRLRWINY 60 LRPDIRRGRF TSEEEKIIIN LHAVVGNRWA HIASHLPGRT DNEIKNYWNS WIKKKIRKSA 120 SPSKTPSSTI DNLQPTYVDN FHHTSVMEQL EYPKQEPSSK PVFAKEFSSV SPPFLPLTGP 180 IEGIRDEIDH EISGLNLEPW QPNCDLHVPS SFGFTSVIDS SYLGNSVERW EEMERENLGN 240 MRENMESMRE NMMRENLESI RENMMRENGG FMGVQVQECN GVEGDERVGR ECMESGWVEA 300 QQYHQGLMLW DQLTTGLGGY AALGPQLSGN VDALAGSYQS PFL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-26 | 14 | 116 | 7 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020532215.1 | 0.0 | transcription factor MYB3 | ||||
TrEMBL | W1NLV1 | 0.0 | W1NLV1_AMBTC; Uncharacterized protein | ||||
STRING | ERM96195 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G63910.1 | 3e-79 | myb domain protein 103 |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00001.72 |
Publications ? help Back to Top | |||
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