PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00001.525
Common NameAMTR_s00001p00272410
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family MYB
Protein Properties Length: 341aa    MW: 38417.2 Da    PI: 6.999
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00001.525genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.86.6e-152975148
                                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                              +g W+ eEd+ lv++v ++G + W+ Ia ++  gR +kqc++rw+++l
  evm_27.model.AmTr_v1.0_scaffold00001.525 29 KGQWSSEEDKMLVRLVDEFGEKKWSQIACRLV-GRVGKQCRERWHNHL 75
                                              799*****************************.*************97 PP
2Myb_DNA-binding55.51.3e-1781123145
                                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
                           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                                               +++W++eE+  lv+a++  G++ W+ Ia++++ gRt++++k++w+
  evm_27.model.AmTr_v1.0_scaffold00001.525  81 KDAWSEEEERTLVEAHADVGNR-WAEIAKCLP-GRTENSIKNHWN 123
                                               689*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.2442475IPR017930Myb domain
SMARTSM007171.1E-122877IPR001005SANT/Myb domain
SuperFamilySSF466891.47E-2928122IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.8E-263082IPR009057Homeodomain-like
CDDcd001674.26E-113275No hitNo description
PfamPF139213.8E-173292No hitNo description
PROSITE profilePS5129425.73376130IPR017930Myb domain
SMARTSM007172.8E-1780128IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.9E-2283130IPR009057Homeodomain-like
CDDcd001674.77E-1283126No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1904095Biological Processnegative regulation of endosperm development
GO:2000692Biological Processnegative regulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MRRFEEEMSS SIAQTLLPTT TTLKTLLIKG QWSSEEDKML VRLVDEFGEK KWSQIACRLV  60
GRVGKQCRER WHNHLRPDIK KDAWSEEEER TLVEAHADVG NRWAEIAKCL PGRTENSIKN  120
HWNATKRRQL STKRSRNSNN NNNHHHGNTT TTSTQRPSTS SVLQEYIKTQ TLPTTTTTTR  180
NLMVGLPPPL KEIPEQLPKM LQAEPLACAG FPIAPNPMAG MENGCSSGSG SSSSSSCGGY  240
SVCDRESCCD MDLFSLLECH ACAGGGSFRG GRNYCYGLEE KQQKEGHDWF PEPKMEIEIK  300
EEEEKVRREA DLFELVAGTV HPECSRWTGN KWVMEPSCFY *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C5e-45261301105C-Myb DNA-Binding Domain
1msf_C5e-45261301105C-Myb DNA-Binding Domain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006829232.30.0transcription factor MYB3R-3
TrEMBLW1NM960.0W1NM96_AMBTC; Uncharacterized protein
STRINGERM966480.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.11e-52myb domain protein 119
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]