PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00001.461
Common NameAMTR_s00001p00270400, LOC18424519
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family MIKC_MADS
Protein Properties Length: 232aa    MW: 26867.7 Da    PI: 8.4576
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00001.461genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.73.2e-28959151
                                              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                                    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                              krien++nrqvtfskRr+g+lKKA+EL +LCda+  +iifss+gkl+ey++
  evm_27.model.AmTr_v1.0_scaffold00001.461  9 KRIENSTNRQVTFSKRRAGLLKKAHELGILCDAQLGLIIFSSNGKLFEYCT 59
                                              79***********************************************96 PP
2K-box89.37.5e-30751705100
                                     K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnell 73 
                                               +g++  e ++++ + e+ak+k+ +++Lq + R++ GedL+sLs+ +L++LeqqLe s +k+R++K+ell
  evm_27.model.AmTr_v1.0_scaffold00001.461  75 TGTRIPEYNHQQVYSEIAKMKNDYDKLQASMRQYTGEDLTSLSMSDLHELEQQLEASATKVRTRKEELL 143
                                               567788999************************************************************ PP

                                     K-box  74 leqieelqkkekelqeenkaLrkklee 100
                                               l+q+e+l++ke+ l+e+n+ Lr+ ++e
  evm_27.model.AmTr_v1.0_scaffold00001.461 144 LQQLENLRRKERILEEQNNHLRHLIQE 170
                                               **********************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.749161IPR002100Transcription factor, MADS-box
SMARTSM004322.0E-40160IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.5E-33292IPR002100Transcription factor, MADS-box
CDDcd002652.76E-44276No hitNo description
PRINTSPR004048.0E-30323IPR002100Transcription factor, MADS-box
PfamPF003197.5E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004048.0E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004048.0E-303859IPR002100Transcription factor, MADS-box
PfamPF014863.7E-2783167IPR002487Transcription factor, K-box
PROSITE profilePS5129716.52984174IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008360Biological Processregulation of cell shape
GO:0019252Biological Processstarch biosynthetic process
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0080155Biological Processregulation of double fertilization forming a zygote and endosperm
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MGRGKIEIKR IENSTNRQVT FSKRRAGLLK KAHELGILCD AQLGLIIFSS NGKLFEYCTH  60
TSSMRQIIDK YLQVTGTRIP EYNHQQVYSE IAKMKNDYDK LQASMRQYTG EDLTSLSMSD  120
LHELEQQLEA SATKVRTRKE ELLLQQLENL RRKERILEEQ NNHLRHLIQE NQAAMENKMA  180
DQTMLDQFGG FYQVEQPANM LQLSPLRGFR LQPTQPNLQE VTLQCPGLQL W*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-19175173MEF2 CHIMERA
6byy_B1e-19175173MEF2 CHIMERA
6byy_C1e-19175173MEF2 CHIMERA
6byy_D1e-19175173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006829168.21e-170MADS-box protein GGM13 isoform X2
SwissprotQ9XGJ44e-90GGM13_GNEGN; MADS-box protein GGM13
TrEMBLW1NMR31e-170W1NMR3_AMBTC; Uncharacterized protein
STRINGERM965841e-171(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.21e-50MIKC_MADS family protein
Publications ? help Back to Top
  1. Winter KU, et al.
    MADS-box genes reveal that gnetophytes are more closely related to conifers than to flowering plants.
    Proc. Natl. Acad. Sci. U.S.A., 1999. 96(13): p. 7342-7
    [PMID:10377416]
  2. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]