PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm_27.model.AmTr_v1.0_scaffold00001.416

Common Name

AMTR_s00001p00267560

Organism

Amborella trichopoda

Taxonomic ID

13333

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

Trihelix

Protein Properties

Length: 461aa MW: 51014 Da PI: 8.3899

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00001.416	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	31.9	3.4e-10	185	251	15	82
trihelix 15 remeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 +e+ ++ r+k ++ + ++v+++++++g++r +k+ kw+n+ ++++k+ e+ek++++e++ +yf evm_27.model.AmTr_v1.0_scaffold00001.416 185 SEVSGSSARAKTRAEKDKQVAEFLSRHGVNRDAKTSGTKWDNMLGEFRKVYEWEKGGENEKV-GKSYF 251 37888888999*********************************************987776.44455 PP

Sequence ? help Back to Top
Protein Sequence Length: 461 aa Download sequence Send to blast
MGDKGDMMKQ SSSFKEPQPQ EELHHQYQLQ RHQKQQHREF CVPVPPASAN IPSPYTPKTL 60 AHREEAERCE PSPKRPRYPV HQWKLIPATM AAPASTQQQV VGYSTSGSSP QAHVSAVAGS 120 SSPAPSSPSS SPRPSFSAGS GQDQAKPTQF LQIRKGKFVS PVWKPNEMLW LARAWRQQYC 180 GGDTSEVSGS SARAKTRAEK DKQVAEFLSR HGVNRDAKTS GTKWDNMLGE FRKVYEWEKG 240 GENEKVGKSY FRLSPYERKM HRLPASFDED VFEEMAQFMA ARGRGLPACK ASTGEGGGAR 300 DQQLLRPTEM VRNSDEGESP VSKQRAILAR NQTGLIAGTT QSSAMEEAGC REMRRVGKMR 360 MLWEESVTLW AEEGEQEGRG RIKMDNLGFL NVNQLTFFDD TMAANSMEGL DDGPLSGFSA 420 DTFACDQQLR VFGRRNSSAG HSEAAQPQPS LAEPCMRCES *

Sequence ? help Back to Top

Protein Sequence Length: 461 aa Download sequence Send to blast

MGDKGDMMKQ SSSFKEPQPQ EELHHQYQLQ RHQKQQHREF CVPVPPASAN IPSPYTPKTL  60
AHREEAERCE PSPKRPRYPV HQWKLIPATM AAPASTQQQV VGYSTSGSSP QAHVSAVAGS  120
SSPAPSSPSS SPRPSFSAGS GQDQAKPTQF LQIRKGKFVS PVWKPNEMLW LARAWRQQYC  180
GGDTSEVSGS SARAKTRAEK DKQVAEFLSR HGVNRDAKTS GTKWDNMLGE FRKVYEWEKG  240
GENEKVGKSY FRLSPYERKM HRLPASFDED VFEEMAQFMA ARGRGLPACK ASTGEGGGAR  300
DQQLLRPTEM VRNSDEGESP VSKQRAILAR NQTGLIAGTT QSSAMEEAGC REMRRVGKMR  360
MLWEESVTLW AEEGEQEGRG RIKMDNLGFL NVNQLTFFDD TMAANSMEGL DDGPLSGFSA  420
DTFACDQQLR VFGRRNSSAG HSEAAQPQPS LAEPCMRCES *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011629107.1	0.0	uncharacterized protein LOC18424474
TrEMBL	W1NMM5	0.0	W1NMM5_AMBTC; Uncharacterized protein
STRING	ERM96539	0.0	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP9479	6	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	5e-08	Trihelix family protein

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00001.416

Publications ? help Back to Top
Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323]