PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00001.217
Common NameAMTR_s00001p00210810
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family GATA
Protein Properties Length: 262aa    MW: 29397.2 Da    PI: 8.1384
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00001.217genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.95.8e-18181215135
                                      GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                               Cs+C + kTp+WR gp g+ktLCnaCG++y++ +l
  evm_27.model.AmTr_v1.0_scaffold00001.217 181 CSHCLVQKTPQWRAGPLGSKTLCNACGVRYKSGRL 215
                                               *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.1E-684259IPR016679Transcription factor, GATA, plant
SMARTSM004013.0E-14175225IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.569175211IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.57E-14176238No hitNo description
Gene3DG3DSA:3.30.50.104.8E-14179213IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.39E-13180237No hitNo description
PfamPF003208.2E-16181215IPR000679Zinc finger, GATA-type
PROSITE patternPS003440181206IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MQGGFPLEME CQGVEDFVED ILDFPIEENG GSCNGEETEN QTENEAADPA SATDLSVPSE  60
AAAELEWLSL FVEDSFSEFP YASGSMVPRN PSEKNRFSPK PISEKLSLAF ERPQVPGRAR  120
SKRLRSDRVW WLKDSSSSPC LIFKNPFRNA DLFYCLQKPP SKTQNRPVKK KPPPENQQRR  180
CSHCLVQKTP QWRAGPLGSK TLCNACGVRY KSGRLLPEYR PAGSPTFLSE IHSNSHRKVL  240
EMRKKKELQK RDSGTSVVET C*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020532258.11e-144GATA transcription factor 5-like, partial
SwissprotQ9FH575e-46GATA5_ARATH; GATA transcription factor 5
TrEMBLW1NM810.0W1NM81_AMBTC; GATA transcription factor
STRINGERM963400.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.23e-48GATA transcription factor 5
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]