PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00001.1
Common NameAMTR_s00001p00009420
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family Nin-like
Protein Properties Length: 621aa    MW: 68573.9 Da    PI: 4.8843
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00001.1genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK21.35.3e-07597621226
                                  RWP-RK   2 ekeisledlskyFslpikdAAkeLg 26 
                                             ek+isl++l++yF++++kdAAk++g
  evm_27.model.AmTr_v1.0_scaffold00001.1 597 EKNISLQVLRQYFAGSLKDAAKSIG 621
                                             89*********************97 PP

Sequence ? help Back to Top
Protein Sequence    Length: 621 aa     Download sequence    Send to blast
MQEAVNPQES LFGSLSEAMD FDFIDEALDG GSWLDAVDCS DLSQPGPSTS SSLLDPSYFV  60
SPVYINTQNP QNTDQDYQEQ AVIFENPMEN PSENLETQSM NHNSISKLGF PDSQWPPNST  120
TGSIMKRWVN PNLVSPVNDR LMQAIQIIKE STSNGDVLVQ IWVPVKKGDS HVLTTCEQPF  180
ILDPRSQTLT RYRTVSMNYF FSAGEGSGGV LGLPGSNEYP RVNYAQEFDV RGTLALPVFE  240
KGSRACLGVV EVIMTDQKIN YAPELDKICR ALQAVDLRSS EVLTPPYVKV RNDGFQSAFP  300
EILDVLKAVC ETHRLPLAQT WVPCIQHGKK GSRHTDESYK DCVSTADGAC YVRDSEMTGF  360
QEACSEHHLF KGQGVAGKAF ATNQPCFSPD VTSFSKMDFP LVHYARVFGL GAAVAIRLKS  420
TYTGAADYVM EFFLPVDCRD NEEQKMMLNS LSVTIQQVCR SLRVVTDKEL EDEMMTQVND  480
VFCSDKMASK SRKADVENPS GDLNKSSSGV GASWREKTGV FLSSMPSGFQ EGRDIMVAQS  540
CHWGSPRVSC HEGGRFFKVE QHQDSANNSA DRGQSFVGEL DFSNAGKGPE KRRAKTEKNI  600
SLQVLRQYFA GSLKDAAKSI G
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011629046.20.0LOW QUALITY PROTEIN: protein NLP1-like
SwissprotQ10S831e-154NLP1_ORYSJ; Protein NLP1
TrEMBLW1NLI60.0W1NLI6_AMBTC; Uncharacterized protein (Fragment)
STRINGERM961240.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP2991697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76350.11e-146Nin-like family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]