PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm_27.model.AmTr_v1.0_scaffold00001.1

Common Name

AMTR_s00001p00009420

Organism

Amborella trichopoda

Taxonomic ID

13333

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

Nin-like

Protein Properties

Length: 621aa MW: 68573.9 Da PI: 4.8843

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00001.1	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	21.3	5.3e-07	597	621	2	26
RWP-RK 2 ekeisledlskyFslpikdAAkeLg 26 ek+isl++l++yF++++kdAAk++g evm_27.model.AmTr_v1.0_scaffold00001.1 597 EKNISLQVLRQYFAGSLKDAAKSIG 621 89*********************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 621 aa Download sequence Send to blast
MQEAVNPQES LFGSLSEAMD FDFIDEALDG GSWLDAVDCS DLSQPGPSTS SSLLDPSYFV 60 SPVYINTQNP QNTDQDYQEQ AVIFENPMEN PSENLETQSM NHNSISKLGF PDSQWPPNST 120 TGSIMKRWVN PNLVSPVNDR LMQAIQIIKE STSNGDVLVQ IWVPVKKGDS HVLTTCEQPF 180 ILDPRSQTLT RYRTVSMNYF FSAGEGSGGV LGLPGSNEYP RVNYAQEFDV RGTLALPVFE 240 KGSRACLGVV EVIMTDQKIN YAPELDKICR ALQAVDLRSS EVLTPPYVKV RNDGFQSAFP 300 EILDVLKAVC ETHRLPLAQT WVPCIQHGKK GSRHTDESYK DCVSTADGAC YVRDSEMTGF 360 QEACSEHHLF KGQGVAGKAF ATNQPCFSPD VTSFSKMDFP LVHYARVFGL GAAVAIRLKS 420 TYTGAADYVM EFFLPVDCRD NEEQKMMLNS LSVTIQQVCR SLRVVTDKEL EDEMMTQVND 480 VFCSDKMASK SRKADVENPS GDLNKSSSGV GASWREKTGV FLSSMPSGFQ EGRDIMVAQS 540 CHWGSPRVSC HEGGRFFKVE QHQDSANNSA DRGQSFVGEL DFSNAGKGPE KRRAKTEKNI 600 SLQVLRQYFA GSLKDAAKSI G

Sequence ? help Back to Top

Protein Sequence Length: 621 aa Download sequence Send to blast

MQEAVNPQES LFGSLSEAMD FDFIDEALDG GSWLDAVDCS DLSQPGPSTS SSLLDPSYFV  60
SPVYINTQNP QNTDQDYQEQ AVIFENPMEN PSENLETQSM NHNSISKLGF PDSQWPPNST  120
TGSIMKRWVN PNLVSPVNDR LMQAIQIIKE STSNGDVLVQ IWVPVKKGDS HVLTTCEQPF  180
ILDPRSQTLT RYRTVSMNYF FSAGEGSGGV LGLPGSNEYP RVNYAQEFDV RGTLALPVFE  240
KGSRACLGVV EVIMTDQKIN YAPELDKICR ALQAVDLRSS EVLTPPYVKV RNDGFQSAFP  300
EILDVLKAVC ETHRLPLAQT WVPCIQHGKK GSRHTDESYK DCVSTADGAC YVRDSEMTGF  360
QEACSEHHLF KGQGVAGKAF ATNQPCFSPD VTSFSKMDFP LVHYARVFGL GAAVAIRLKS  420
TYTGAADYVM EFFLPVDCRD NEEQKMMLNS LSVTIQQVCR SLRVVTDKEL EDEMMTQVND  480
VFCSDKMASK SRKADVENPS GDLNKSSSGV GASWREKTGV FLSSMPSGFQ EGRDIMVAQS  540
CHWGSPRVSC HEGGRFFKVE QHQDSANNSA DRGQSFVGEL DFSNAGKGPE KRRAKTEKNI  600
SLQVLRQYFA GSLKDAAKSI G

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011629046.2	0.0	LOW QUALITY PROTEIN: protein NLP1-like
Swissprot	Q10S83	1e-154	NLP1_ORYSJ; Protein NLP1
TrEMBL	W1NLI6	0.0	W1NLI6_AMBTC; Uncharacterized protein (Fragment)
STRING	ERM96124	0.0	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP299	16	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76350.1	1e-146	Nin-like family protein

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00001.1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323]