PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT5G49200.1 | ||||||||
Common Name | K21P3.7, ZFWD4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | C3H | ||||||||
Protein Properties | Length: 419aa MW: 46069.6 Da PI: 8.6455 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.7 | 4e-08 | 95 | 114 | 6 | 26 |
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C+++ G Ck+G++C+F H+ AT5G49200.1 95 CKYWKD-GKCKRGEQCQFLHS 114 ******.*************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.53 | 89 | 116 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.0E-5 | 90 | 115 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.19E-7 | 91 | 114 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.2E-7 | 91 | 114 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-5 | 95 | 114 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF50978 | 1.65E-47 | 115 | 171 | IPR017986 | WD40-repeat-containing domain |
SMART | SM00320 | 0.001 | 120 | 159 | IPR001680 | WD40 repeat |
Gene3D | G3DSA:2.130.10.10 | 4.4E-46 | 122 | 413 | IPR015943 | WD40/YVTN repeat-like-containing domain |
PROSITE profile | PS50082 | 13.182 | 127 | 168 | IPR001680 | WD40 repeat |
PROSITE profile | PS50294 | 24.152 | 127 | 419 | IPR017986 | WD40-repeat-containing domain |
Pfam | PF11715 | 8.9E-6 | 142 | 175 | No hit | No description |
PROSITE pattern | PS00678 | 0 | 146 | 160 | IPR019775 | WD40 repeat, conserved site |
PRINTS | PR00320 | 3.0E-7 | 146 | 160 | IPR020472 | G-protein beta WD-40 repeat |
SMART | SM00320 | 87 | 201 | 238 | IPR001680 | WD40 repeat |
SuperFamily | SSF50978 | 1.65E-47 | 211 | 416 | IPR017986 | WD40-repeat-containing domain |
SMART | SM00320 | 2.5E-6 | 247 | 284 | IPR001680 | WD40 repeat |
Pfam | PF00400 | 7.7E-6 | 249 | 284 | IPR001680 | WD40 repeat |
PROSITE profile | PS50082 | 13.048 | 254 | 293 | IPR001680 | WD40 repeat |
PRINTS | PR00320 | 3.0E-7 | 271 | 285 | IPR020472 | G-protein beta WD-40 repeat |
PROSITE pattern | PS00678 | 0 | 271 | 285 | IPR019775 | WD40 repeat, conserved site |
SMART | SM00320 | 3.7E-5 | 287 | 324 | IPR001680 | WD40 repeat |
Pfam | PF00400 | 0.0019 | 289 | 323 | IPR001680 | WD40 repeat |
PRINTS | PR00320 | 3.0E-7 | 311 | 325 | IPR020472 | G-protein beta WD-40 repeat |
SMART | SM00320 | 260 | 330 | 372 | IPR001680 | WD40 repeat |
SMART | SM00320 | 6.7 | 375 | 412 | IPR001680 | WD40 repeat |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008150 | Biological Process | biological_process | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 419 aa Download sequence Send to blast |
MDYKAPRRYY SHGVVARQQD FATDIVTRRR PYVPYDRPNK FSRSLVWTSK EYKSPEGNNM 60 PRTNDVSPKP PVLGLARKNA ACGPMRSSSL RKWVCKYWKD GKCKRGEQCQ FLHSWSCFPG 120 LAMVASLEGH NKELKGIALP EGSDKLFSVS IDGTLRVWDC NSGQCVHSIN LDAEAGSLIS 180 EGPWVFLGLP NAIKAFNVQT SQDLHLQAAG VVGQVNAMTI ANGMLFAGTS SGSILVWKAT 240 TDSESDPFKY LTSLEGHSGE VTCFAVGGQM LYSGSVDKTI KMWDLNTLQC IMTLKQHTGT 300 VTSLLCWDKC LISSSLDGTI KVWAYSENGI LKVVQTRRQE QSSVHALSGM HDAEAKPIIF 360 CSYQNGTVGI FDLPSFQERG RMFSTHTIAT LTIGPQGLLF SGDESGNLRV WTLAAGNKV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6g6m_A | 8e-20 | 115 | 416 | 6 | 322 | Tako8 |
6g6n_A | 8e-20 | 115 | 416 | 6 | 322 | Tako8 |
6g6n_B | 8e-20 | 115 | 416 | 6 | 322 | Tako8 |
6g6n_C | 8e-20 | 115 | 416 | 6 | 322 | Tako8 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 18423000 | 0.0 | ||||
Genevisible | 249319_s_at | 1e-121 | ||||
Expression Atlas | AT5G49200 | - | ||||
AtGenExpress | AT5G49200 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT5G49200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT5G49200 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB016872 | 0.0 | AB016872.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K21P3. | |||
GenBank | AJ252066 | 0.0 | AJ252066.1 Arabidopsis thaliana partial mRNA for zfwd4 protein (zfwd4 gene). | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_199731.1 | 0.0 | WD-40 repeat family protein / zfwd4 protein (ZFWD4) | ||||
Swissprot | Q9FE91 | 0.0 | C3H62_ARATH; Zinc finger CCCH domain-containing protein 62 | ||||
TrEMBL | A0A178UC98 | 0.0 | A0A178UC98_ARATH; Uncharacterized protein | ||||
STRING | AT5G49200.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4048 | 18 | 48 | Representative plant | OGRP1065 | 16 | 24 |
Link Out ? help Back to Top | |
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Phytozome | AT5G49200.1 |
Entrez Gene | 834979 |
iHOP | AT5G49200 |
wikigenes | AT5G49200 |
Publications ? help Back to Top | |||
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