PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT5G46010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | WOX | ||||||||
Protein Properties | Length: 122aa MW: 14043.6 Da PI: 6.9735 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 50.5 | 3.5e-16 | 52 | 112 | 2 | 56 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC.....TS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl.....gLterqVkvWFqNrRakek 56 ++ ++++++q ++LeelF + +ps +++++++ kl ++++++V+ WF+Nr++ +k AT5G46010.1 52 KPEWKPNQHQAQILEELFIGgTVNPSLTSIKQITIKLqsygeEVDDADVYKWFHNRKYSRK 112 899****************99*************************************988 PP | |||||||
2 | Wus_type_Homeobox | 62.3 | 1e-20 | 52 | 112 | 3 | 62 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGk.iedkNVfyWFQNrkaRer 62 ++ W P+++Q +iLeel+ G+++P+ i++it +L++yG+ ++d+ V+ WF Nrk + AT5G46010.1 52 KPEWKPNQHQAQILEELFIGGTVNPSLTSIKQITIKLQSYGEeVDDADVYKWFHNRKYSRK 112 678**************************************55*************96554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 9.2E-7 | 44 | 112 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 4.6E-14 | 52 | 112 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 6.5E-4 | 55 | 112 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005773 | Cellular Component | vacuole | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 122 aa Download sequence Send to blast |
MSSSSNKNSN KDHDDHHNDQ GQHNTIHTPS FMHTFEISNI SSPSSPVVSD PKPEWKPNQH 60 QAQILEELFI GGTVNPSLTS IKQITIKLQS YGEEVDDADV YKWFHNRKYS RKPKLVSYFM 120 FL |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 18422618 | 0.0 | ||||
Genevisible | 248930_at | 1e-150 | ||||
Expression Atlas | AT5G46010 | - | ||||
AtGenExpress | AT5G46010 | - | ||||
ATTED-II | AT5G46010 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT5G46010.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT5G46010 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB006698 | 1e-126 | AB006698.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MCL19. | |||
GenBank | CP002688 | 1e-126 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001318748.1 | 8e-80 | Homeodomain-like superfamily protein | ||||
TrEMBL | Q9FNM1 | 3e-85 | Q9FNM1_ARATH; Uncharacterized protein | ||||
STRING | AT5G46010.1 | 6e-86 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM30492 | 2 | 2 |
Link Out ? help Back to Top | |
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Phytozome | AT5G46010.1 |
Entrez Gene | 834641 |
iHOP | AT5G46010 |
wikigenes | AT5G46010 |
Publications ? help Back to Top | |||
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