PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT5G41765.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | GeBP | ||||||||
Protein Properties | Length: 152aa MW: 17372.9 Da PI: 10.2048 | ||||||||
Description | DNA-binding storekeeper protein-related transcriptional regulator | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 43.5 | 9.1e-14 | 42 | 103 | 17 | 80 |
DUF573 17 qGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsf 80 + ++dfka t +psdd+++ y+f+++ is++v + ++veK+++LKkK +k+ + k+ s AT5G41765.1 42 KSMMDFKALTRHNPSDDMTGAYNFLHEYISVDVYSYEFVEKMKSLKKKLIEKMGI--NAKDLSS 103 78***************************************************99..4444333 PP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008150 | Biological Process | biological_process | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 152 aa Download sequence Send to blast |
MDKANTNRSK KEVCGGSGEA KPTGKKRKNE RTLTNKNVNA KKSMMDFKAL TRHNPSDDMT 60 GAYNFLHEYI SVDVYSYEFV EKMKSLKKKL IEKMGINAKD LSSSIGSELL KLIWRYDVKS 120 VVEYNLLKIE QANFTSHPQI SFNNSEPKKT NL |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 22327503 | 0.0 | ||||
Expression Atlas | AT5G41765 | - | ||||
AtGenExpress | AT5G41765 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT5G41765.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT5G41765 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB016871 | 0.0 | AB016871.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K16L22. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_680374.1 | 1e-109 | DNA-binding storekeeper protein-related transcriptional regulator | ||||
Swissprot | F4JYJ1 | 1e-110 | STKLV_ARATH; Probable transcription factor At5g41765 | ||||
TrEMBL | D7MIR8 | 2e-31 | D7MIR8_ARALL; Uncharacterized protein | ||||
STRING | AT5G41765.1 | 1e-108 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16691 | 7 | 12 |
Link Out ? help Back to Top | |
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Phytozome | AT5G41765.1 |
Entrez Gene | 834181 |
iHOP | AT5G41765 |
wikigenes | AT5G41765 |