PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT5G39690.1
Common NameANAC093, NAC093
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 294aa    MW: 33733.5 Da    PI: 4.6269
Description NAC domain containing protein 93
Gene Model
Gene Model ID Type Source Coding Sequence
AT5G39690.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM54.15.3e-174212852128
          NAM  52 kaeekewyfFskrdkkyatgkrknra...........tksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                  k+++kew+  ++r+k  +  ++++r+           t+ gyW+at   +++ + ++ +vg k+ L++y+ + ++ +ktdW+m+ey+l
  AT5G39690.1  42 KGNDKEWFIITERNKVDQGLSQTKRVgngakrqkrvdTNGGYWHATVAAQKINA-GDGVVGNKRPLAYYDRKPSEDVKTDWLMQEYSL 128
                  3477899999999998885555555455555555556****************9.9999***********9***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100517.3821146IPR003441NAC domain
PfamPF023651.2E-832128IPR003441NAC domain
SuperFamilySSF1019417.06E-1840134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MAKKEKIEQV ISMGGIMWEG LNSSLIKVDE ALLKQQIREF EKGNDKEWFI ITERNKVDQG  60
LSQTKRVGNG AKRQKRVDTN GGYWHATVAA QKINAGDGVV GNKRPLAYYD RKPSEDVKTD  120
WLMQEYSLDH NNDKVRLHFV QDLSYSTSNK EVGEEKKKQK KGEPVEASEG QQPCNAEYHQ  180
PLAPLDSCQP QPHDLAEQLD LHQPEQLQLQ QPHDIVYQPQ YCLLPEQHQL QPFPDNFSEL  240
NSFQQQPVMI PDDLEDFLAE LMEPHSLDGD EESNNYGFFE GLFDTEGIND KTLH
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO184218950.0
Genevisible249463_s_at1e-108
Expression AtlasAT5G39690-
AtGenExpressAT5G39690-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT5G39690.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT5G39690
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0122430.0AB012243.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MIJ24.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_198785.10.0NAC domain containing protein 93
TrEMBLF4KEI60.0F4KEI6_ARATH; NAC domain containing protein 93
STRINGAT5G39690.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27931563
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Ooka H, et al.
    Comprehensive analysis of NAC family genes in Oryza sativa and Arabidopsis thaliana.
    DNA Res., 2003. 10(6): p. 239-47
    [PMID:15029955]