PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT5G25470.1
Common NameT14C9.20
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 280aa    MW: 32023.1 Da    PI: 6.4236
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT5G25470.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.81.4e-11311131299
                  HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  ++++ ++p +f+++  g    +  +++  ++g+sW++ l  ++  +  +++++ W eFv++n+L  +D v F++d+ + f l v++f++
  AT5G25470.1  31 SKSMRSFPEEFVKSTPGA--FEHRVVFSVRWGNSWQLWL--EREEKDlFMIEEDWDEFVDDNHLGPNDNVFFRHDD-KMF-LEVQIFKN 113
                  3355699*****999655..3446***************..7777777*************************866.555.69998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.24E-1614114IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-1516114IPR015300DNA-binding pseudobarrel domain
CDDcd100174.38E-1217112No hitNo description
SMARTSM010192.3E-1419114IPR003340B3 DNA binding domain
PROSITE profilePS5086311.09620114IPR003340B3 DNA binding domain
PfamPF023621.2E-931113IPR003340B3 DNA binding domain
SuperFamilySSF1019362.94E-13177268IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-9178268IPR015300DNA-binding pseudobarrel domain
SMARTSM010197.2E-11184280IPR003340B3 DNA binding domain
PROSITE profilePS508636.626242276IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000293anatomyguard cell
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009047anatomystem
PO:0009052anatomyflower pedicel
PO:0025022anatomycollective leaf structure
PO:0001185developmental stageplant embryo globular stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MLPRNATDKI QGNVSKPCFW KSLSPGQNWK SKSMRSFPEE FVKSTPGAFE HRVVFSVRWG  60
NSWQLWLERE EKDLFMIEED WDEFVDDNHL GPNDNVFFRH DDKMFLEVQI FKNDGNEIID  120
APPEVEPETE PFHPTTPKNS HKETTTASAS ASASEFSDNW RETHGCADIK NPELYLLNPK  180
NPYFVKTLTK GNDVLYVPKT VIKKYGLKFG PHLSPMHYLL PGDKINGSTK IYGGGSAPCF  240
NGWVDLCRKY NLKTGDSMVC ELERSGELVT AVRVHFINKT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.235620.0flower| root| silique
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1865256530.0
Genevisible246889_at0.0
Expression AtlasAT5G25470-
AtGenExpressAT5G25470-
ATTED-IIAT5G25470-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT5G25470.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT5G25470
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4469820.0DQ446982.1 Arabidopsis thaliana clone pENTR221-At5g25470 unknown (At5g25470) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001318648.10.0AP2/B3-like transcriptional factor family protein
RefseqNP_568472.10.0AP2/B3-like transcriptional factor family protein
RefseqNP_851074.10.0AP2/B3-like transcriptional factor family protein
SwissprotQ1PDT60.0Y5547_ARATH; B3 domain-containing protein At5g25470
TrEMBLA0A178UER30.0A0A178UER3_ARATH; Uncharacterized protein
STRINGAT5G25470.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44911645
Publications ? help Back to Top
  1. Underwood BA,Vanderhaeghen R,Whitford R,Town CD,Hilson P
    Simultaneous high-throughput recombinational cloning of open reading frames in closed and open configurations.
    Plant Biotechnol. J., 2006. 4(3): p. 317-24
    [PMID:17147637]
  2. Swaminathan K,Peterson K,Jack T
    The plant B3 superfamily.
    Trends Plant Sci., 2008. 13(12): p. 647-55
    [PMID:18986826]
  3. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]